Bioinformatics Core Facility

Articles

• Cytokinins regulate spatially specific ethylene production to control root growth in Arabidopsis

  YAMOUNE Amel ŽĎÁRSKÁ Markéta DEPAEPE Thomas RUDOLFOVÁ Anna SKALÁK Jan BERENDZEN Kenneth Wayne MIRA-RODADO Virtudes FITZ Michael PEKÁROVÁ Blanka MALÁ Katrina Leslie TARR Paul ŠPAČKOVÁ Eliška TOMOVIČOVÁ Lucia PARIZKOVA Barbora FRANCZYK Abigail KOVÁČOVÁ Ingrid DOLGIKH Vladislav ZEMLYANSKAYA Elena PERNISOVÁ Markéta NOVAK Ondrej MEYEROWITZ Elliot HARTER Klaus VAN DER STRAETEN Dominique HEJÁTKO Jan

  Article in Periodical

• Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

  MARTINEK Vlastimil MARTIN Jessica BELAIR Cedric PAYEA Matthew J MALLA Sulochan ALEXIOU Panagiotis MARAGKAKIS Manolis

  Article in Periodical

  NAR Genomics and Bioinformatics, year: 2024, volume: Vol. 6, edition: Issue 3, DOI

• Heterosis versus breakdown in cyprinid hybrids associated with SVCV infection revealed by transcriptome profile analysis of head kidney

  VETEŠNÍKOVÁ ŠIMKOVÁ Andrea KŘÍŽOVÁ Kristína VOŘÍŠKOVÁ Kristýna VETEŠNÍK Lukáš HEJRET Václav GETTOVÁ Lenka VOREL Jiří RESLOVÁ Nikol BYSTRÝ Vojtěch

  Article in Periodical

  Aquaculture, year: 2024, volume: 578, edition: January, DOI

• Hormone-regulated expansins: Expression, localization, and cell wall biomechanics in Arabidopsis root growth

  ŠÁMALOVÁ Markéta MELNIKAVA Alesia ELSAYAD Kareem PEAUCELLE Alexis GAHUROVÁ Evelína GUMULEC Jaromír SPYROGLOU Ioannis ZEMLYANSKAYA Elena V UBOGOEVA Elena V BALKOVÁ Darina DEMKO Martin BLAVET Nicolas ALEXIOU Panagiotis BENES Vladimir MOUILLE Gregory HEJÁTKO Jan

  Article in Periodical

  Plant Physiology, year: 2024, volume: 194, edition: 1, DOI

• JUN mediates the senescence associated secretory phenotype and immune cell recruitment to prevent prostate cancer progression

  REDMER Torben RAIGEL Martin STERNBERG Christina ZIEGLER Roman PROBST Clara LINDNER Desiree AUFINGER Astrid LIMBERGER Tanja TRACHTOVÁ Karolína KODAJOVA Petra HOEGLER Sandra SCHLEDERER Michaela STOIBER Stefan OBERHUBER Monika BOLIS Marco NEUBAUER Heidi A MIRANDA Sara TOMBERGER Martina HARBUSCH Nora S INES Garces de los Fayos Alonso STERNBERG Felix MORIGGL Richard THEURILLAT Jean-Philippe TICHÝ Boris BYSTRÝ Vojtěch PERSSON Jenny L MATHAS Stephan ABERGER Fritz STROBL Birgit POSPÍŠILOVÁ Šárka MERKEL Olaf EGGER Gerda LAGGER Sabine KENNER Lukas

  Article in Periodical

  Molecular Cancer, year: 2024, volume: 23, edition: 1, DOI

• Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model

  SIKORA Maciej KLIMENTOVÁ Eva UCHAL Dawid ŠRÁMKOVÁ Denisa PERLINSKA Agata P NGUYEN Mai Lan KORPACZ Marta MALINOWSKA Roksana NOWAKOWSKI Szymon RUBACH Pawel ŠIMEČEK Petr SULKOWSKA Joanna I

  Article in Periodical

  Protein Science, year: 2024, volume: 33, edition: 7, DOI

• RBP-Tar – a searchable database for experimental RBP binding sites

  GREŠOVÁ Katarína RAČEK Tomáš MARTINEK Vlastimil ČECHÁK David SVOBODOVÁ Radka ALEXIOU Panagiotis

  Article in Periodical

  F1000Research, year: 2024, DOI

• Reproduction-associated pathways in females of gibel carp (Carassius gibelio) shed light on the molecular mechanisms of the coexistence of asexual and sexual reproduction

  JACQUES Florian TICHOPÁD Tomáš DEMKO Martin BYSTRÝ Vojtěch KŘÍŽOVÁ Kristína SEIFERTOVÁ Mária VOŘÍŠKOVÁ Kristýna FUAD Md Mehedi Hasan VETEŠNÍK Lukáš VETEŠNÍKOVÁ ŠIMKOVÁ Andrea

  Article in Periodical

  BMC Genomics, year: 2024, volume: 25, edition: 1, DOI

• Stromal cells engineered to express T cell factors induce robust CLL cell proliferation in vitro and in PDX co-transplantations allowing the identification of RAF inhibitors as anti-proliferative drug

  HOFERKOVÁ Eva ŠEDA Václav CESNÁRIKOVÁ Soňa VERNER Jan LOJA Tomáš MATULOVÁ Květoslava SKUHROVÁ FRANCOVÁ Hana ONDROUŠKOVÁ Eva FILIP Daniel BLAVET Nicolas BOUDNÝ Miroslav MLADONICKÁ PAVLASOVÁ Gabriela VEČEŘA Josef ONDRIŠOVÁ Laura PAVELKOVÁ Petra HLAVÁČ Kryštof KOŠŤÁLOVÁ Lenka MICHAELOU Androniki POSPÍŠILOVÁ Šárka DORAZILOVÁ Jana CHOCHOLA Václav JAROŠ Josef DOUBEK Michael JAROŠOVÁ Marie HAMPL Aleš VOJTOVÁ Lucy KŘEN Leoš MAYER Jiří MRÁZ Marek

  Article in Periodical

  Leukemia, year: 2024, volume: 38, edition: 8, DOI

• TeloBase: a community-curated database of telomere sequences across the tree of life

  LYČKA Martin BUBENÍK Michal ZÁVODNÍK Michal PESKA Vratislav FAJKUS Petr DEMKO Martin FAJKUS Jiří FOJTOVÁ Miloslava

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI