Centre for Biomedical Image Analysis

Articles

• Antarstick: Extracting Snow Height From Time-Lapse Photography

  LANG Matěj MRÁZ Radoslav TRTÍK Marek STOPPEL Sergej BYŠKA Jan KOZLÍKOVÁ Barbora

  Article in Periodical

  COMPUTER GRAPHICS FORUM, year: 2024, volume: 43, edition: 3, DOI

• Generative modeling of living cells with SO(3)-equivariant implicit neural representations

  WIESNER David SUK Julian DUMMER Sven NEČASOVÁ Tereza VLADIMÍR Ulman SVOBODA David WOLTERINK Jelmer

  Article in Periodical

  Medical Image Analysis, year: 2024, volume: 2024, edition: 91, DOI

• Interpreting convolutional neural network classifiers applied to laser-induced breakdown optical emission spectra

  KÉPEŠ Erik VRÁBEL Jakub BRÁZDIL Tomáš HOLUB Petr POŘÍZKA Pavel KAISER Jozef

  Article in Periodical

  Talanta, year: 2024, volume: 266, edition: 124946, DOI

• MAPHIS-Measuring arthropod phenotypes using hierarchical image segmentations

  MRÁZ Radoslav ŠTĚPKA Karel PEKÁR Matěj MATULA Petr PEKÁR Stanislav

  Article in Periodical

  Methods in Ecology and Evolution, year: 2024, volume: 15, edition: 1, DOI

• Metrics reloaded: recommendations for image analysis validation

  MAIER-HEIN Lena REINKE Annika GODAU Patrick TIZABI Minu D BUETTNER Florian CHRISTODOULOU Evangelia GLOCKER Ben ISENSEE Fabian KLEESIEK Jens KOZUBEK Michal REYES Mauricio RIEGLER Michael A WIESENFARTH Manuel KAVUR A Emre SUDRE Carole H BAUMGARTNER Michael EISENMANN Matthias HECKMANN-NOETZEL Doreen RAEDSCH Tim ACION Laura ANTONELLI Michela ARBEL Tal BAKAS Spyridon BENIS Arriel BLASCHKO Matthew B CARDOSO M Jorge CHEPLYGINA Veronika CIMINI Beth A COLLINS Gary S FARAHANI Keyvan FERRER Luciana GALDRAN Adrian BRAM van Ginneken HAASE Robert HASHIMOTO Daniel A HOFFMAN Michael M HUISMAN Merel JANNIN Pierre KAHN Charles E KAINMUELLER Dagmar KAINZ Bernhard KARARGYRIS Alexandros KARTHIKESALINGAM Alan KOFLER Florian KOPP-SCHNEIDER Annette KRESHUK Anna KURC Tahsin LANDMAN Bennett A LITJENS Geert MADANI Amin MAIER-HEIN Klaus MARTEL Anne L MATTSON Peter MEIJERING Erik MENZE Bjoern MOONS Karel G M MUELLER Henning NICHYPORUK Brennan NICKEL Felix PETERSEN Jens RAJPOOT Nasir RIEKE Nicola SAEZ-RODRIGUEZ Julio SANCHEZ Clara I SHETTY Shravya MAARTEN van Smeden SUMMERS Ronald M TAHA Abdel A TIULPIN Aleksei TSAFTARIS Sotirios A BEN Van Calster VAROQUAUX Gael JAEGER Paul F

  Article in Periodical

  NATURE METHODS, year: 2024, volume: 21, edition: February, DOI

• Possibilities of Using Multi-b-value Diffusion Magnetic Resonance Imaging for Classification of Brain Lesions

  KOPŘIVOVÁ Tereza KEŘKOVSKÝ Miloš JŮZA Tomáš VYBÍHAL Václav ROHAN Tomáš KOZUBEK Michal DOSTÁL Marek

  Article in Periodical

  Academic Radiology, year: 2024, volume: 31, edition: 1, DOI

• Understanding metric-related pitfalls in image analysis validation

  REINKE Annika TIZABI Minu D BAUMGARTNER Michael EISENMANN Matthias HECKMANN-NÖTZEL Doreen KAVUR A Emre RÄDSCH Tim SUDRE Carole H ACION Laura ANTONELLI Michela ARBEL Tal BAKAS Spyridon BENIS Arriel BUETTNER Florian CARDOSO M Jorge CHEPLYGINA Veronika CHEN Jianxu CHRISTODOULOU Evangelia CIMINI Beth A FARAHANI Keyvan FERRER Luciana GALDRAN Adrian GINNEKEN Bram van GLOCKER Ben GODAU Patrick HASHIMOTO Daniel A HOFFMAN Michael M HUISMAN Merel ISENSEE Fabian JANNIN Pierre KAHN Charles E KAINMUELLER Dagmar KAINZ Bernhard KARARGYRIS Alexandros KLEESIEK Jens KOFLER Florian KOOI Thijs KOPP-SCHNEIDER Annette KOZUBEK Michal KRESHUK Anna KURC Tahsin LANDMAN Bennett A LITJENS Geert MADANI Amin MAIER-HEIN Klaus MARTEL Anne L MEIJERING Erik MENZE Bjoern MOONS Karel GM MÜLLER Henning NICHYPORUK Brennan NICKEL Felix PETERSEN Jens RAFELSKI Susanne M RAJPOOT Nasir REYES Mauricio RIEGLER Michael A RIEKE Nicola SAEZ-RODRIGUEZ Julio SÁNCHEZ Clara I SHETTY Shravya SUMMERS Ronald M TAHA Abdel A TIULPIN Aleksei TSAFTARIS Sotirios A CALSTER Ben Van VAROQUAUX Gaël YANIV Ziv R JÄGER Paul F MAIER-HEIN Lena

  Article in Periodical

  NATURE METHODS, year: 2024, volume: 21, edition: February, DOI

Conference proceedings

• Brain MRI Screening Tool with Federated Learning

  STOKLASA Roman STATHOPOULOS Ioannis KARAVASILIS Efstratios EFSTATHOPOULOS Efstathios DOSTÁL Marek KEŘKOVSKÝ Miloš KOZUBEK Michal SERIO Luigi

  Article in Proceedings

  2024 IEEE International Symposium on Biomedical Imaging, year: 2024

• Cell Tracking based on Integer Linear Programming and Probability Scores

  LUX Filip MATULA Petr

  Article in Proceedings

  Athens, Greece, IEEE 21th International Symposium on Biomedical Imaging, year: 2024

• Gravitational Cell Detection and Tracking in Fluorescence Microscopy Data

  EFTIMIU Nikomidisz Jorgosz KOZUBEK Michal

  Article in Proceedings

  24 IEEE International Symposium on Biomedical Imaging (ISBI), year: 2024