Molecular Modelling and Bioinformatics

Articles

• A computational workflow for analysis of missense mutations in precision oncology

  KHAN Rayyan Tariq POKORNÁ Petra DVORSKÝ Jan BORKO Simeon AREFIEV Ihor PLANAS IGLESIAS Joan DOBIÁŠ Adam RANGEL PAMPLONA PIZARRO PINTO José Gaspar SZOTKOWSKÁ Veronika ŠTĚRBA Jaroslav SLABÝ Ondřej DAMBORSKÝ Jiří MAZURENKO Stanislav BEDNÁŘ David

  Article in Periodical

  JOURNAL OF CHEMINFORMATICS, year: 2024, volume: 16, edition: 1, DOI

• AggreProt: a web server for predicting and engineering aggregation prone regions in proteins

  PLANAS IGLESIAS Joan BORKO Simeon SWIATKOWSKI Jan ELIAS Matej HAVLÁSEK Martin SALAMON Ondrej GRAKOVA Ekaterina KUNKA Antonín MARTINOVIC Tomas DAMBORSKÝ Jiří MARTINOVIC Jan BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: W1, DOI

• Azobenzene-Based Photoswitchable Substrates for Advanced Mechanistic Studies of Model Haloalkane Dehalogenase Enzyme Family

  SLÁNSKÁ Michaela ŠTACKOVÁ Lenka MARQUES Sérgio Manuel ŠTACKO Peter MARTÍNEK Marek JÍLEK Luboš TOUL Martin DAMBORSKÝ Jiří BEDNÁŘ David KLÁN Petr PROKOP Zbyněk

  Article in Periodical

  ACS Catalysis, year: 2024, volume: 14, edition: 15, DOI

• BenchStab: A tool for automated querying of web-based stability predictors

  VELECKÝ Jan BEREZNÝ Matej MUSIL Miloš DAMBORSKÝ Jiří BEDNÁŘ David MAZURENKO Stanislav

  Article in Periodical

  BIOINFORMATICS, year: 2024, volume: 40, edition: 9, DOI

• Computer-aided engineering of stabilized fibroblast growth factor 21

  DE LA BOURDONNAYE Gabin GHAZALOVÁ Tereza FOJTÍK Petr KUTALKOVA Katerina BEDNÁŘ David DAMBORSKÝ Jiří ROTREKL Vladimír STEPANKOVA Veronika CHALOUPKOVÁ Radka

  Article in Periodical

  Computational and Structural Biotechnology Journal, year: 2024, volume: 23, edition: December 2024, DOI

• CoVAMPnet: Comparative Markov State Analysis for Studying Effects of Drug Candidates on Disordered Biomolecules

  MARQUES Sérgio Manuel KOUBA Petr LEGRAND Anthony Thomas P SEDLAR Jiri DISSON Lucas PLANAS IGLESIAS Joan SANUSI Zainab Kemi KUNKA Antonín DAMBORSKÝ Jiří PAJDLA Tomas PROKOP Zbyněk MAZURENKO Stanislav SIVIC Josef BEDNÁŘ David

  Article in Periodical

  JACS AU, year: 2024, volume: 4, edition: 6, DOI

• Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes

  MIČAN Jan JARADAT Da 'san M. M. LIU Weidong WEBER Gert MAZURENKO Stanislav BORNSCHEUER Uwe T. DAMBORSKÝ Jiří WEI Ren BEDNÁŘ David

  Article in Periodical

  Applied Catalysis B: Environment and Energy, year: 2024, volume: 342, edition: March 2024, DOI

• FireProt 2.0: web-based platform for the fully automated design of thermostable proteins

  MUSIL Miloš JEZIK Andrej HORÁČKOVÁ Jana BORKO Simeon KABOUREK Petr DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• InVADo: Interactive Visual Analysis of Molecular Docking Data

  SCHÄFER Marco BRICH Nicolas BYŠKA Jan MARQUES Sérgio Manuel BEDNÁŘ David THIEL Philipp KOZLÍKOVÁ Barbora KRONE Michael

  Article in Periodical

  IEEE Transactions on Visualization and Computer Graphics, year: 2024, volume: 30, edition: 4, DOI