Mgr. Jan Dvorský, Ph.D.

2019

• Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI

• Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VAVRA O. KOKKONEN Piia Pauliina FILIPOVIČ Jiří FONSECA PINTO Gabriela Filipa SCHENKMAYEROVÁ Andrea DAMBORSKÝ Jiří BEDNÁŘ David

  Conference abstract

  Year: 2019, type: Conference abstract

• CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

  VÁVRA Ondřej FILIPOVIČ Jiří PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan ŠTOURAČ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 23, DOI

• Fast Screening of Inhibitor Binding/Unbinding using Novel Software Tool CaverDock

  RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej FILIPOVIČ Jiří ŠTOURAČ Jan BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 7, edition: OCT 29 2019, DOI

2018

• CalFitter: a web server for analysis of protein thermal denaturation data

  MAZURENKO Stanislav ŠTOURAČ Jan KUNKA Antonín NEDELJKOVIC S. BEDNÁŘ David PROKOP Zbyněk DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI

• CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories

  JURČÍK Adam BEDNÁŘ David BYŠKA Jan MARQUES Sérgio Manuel FURMANOVÁ Katarína DANIEL Lukáš KOKKONEN Piia Pauliina BREZOVSKÝ Jan STRNAD Ondřej ŠTOURAČ Jan PAVELKA Antonín MANAK Martin DAMBORSKÝ Jiří KOZLÍKOVÁ Barbora

  Article in Periodical

  Bioinformatics, year: 2018, volume: 34, edition: 20, DOI

• HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information

  SUMBALOVÁ Lenka ŠTOURAČ Jan MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI

2017

• FireProt 1.0

  MUSIL Miloš ŠTOURAČ Jan BENDL Jaroslav BREZOVSKÝ Jan PROKOP Zbyněk ZENDULKA J. MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Year: 2017

• FireProt: Web Server for Automated Design of Thermostable Proteins

  MUSIL Miloš ŠTOURAČ Jan BENDL Jaroslav BREZOVSKÝ Jan PROKOP Zbyněk ZENDULKA Jaroslav MARTÍNEK Tomáš BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2017, volume: 45, edition: W1, DOI

• NewProt – a Protein Engineering Portal

  SCHWARTE Andreas GENZ Maika SKALDEN Lilly NOBILI Alberto VICKERS Clare MELSE Okke KUIPERS Remko JOOSTEN Henk_jan ŠTOURAČ Jan BENDL Jaroslav BLACK Jon HAASE Peter BAAKMAN Coos DAMBORSKÝ Jiří BORNSCHEUER Uwe VRIEND Gert VENSELAAR Hanka

  Article in Periodical

  PROTEIN ENGINEERING, DESIGN & SELECTION, year: 2017, volume: 30, edition: 6, DOI