Mgr. Naděžda Špačková, Ph.D.

2007

• Molecular dynamics simulations of RNA: An in silico single molecule approach

  MCDOWELL Elizabeth ŠPAČKOVÁ Naďa ŠPONER Jiří WALTER Nils

  Article in Periodical

  BIOPOLYMERS, year: 2007, volume: 85, edition: 2

• Ribosomal RNA motifs and segments have salient flexibilities

  ŠPONER Jiří MOKDAD Ali RÁZGA Filip RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

2006

• Molecular dynamics simulations of nucleic acids: MD simulations of G-DNA and functional RNAs

  ŠPAČKOVÁ Naděžda CHEATHAM Thomas E ŠPONER Jiří

  Chapter of a book

  Challenges and advances in computational chemistry and physics. Computational studies of RNA and DNA, year: 2006, number of pages: 26 s.

• Molecular dynamics simulations of sarcin-ricin rRNA motif

  ŠPAČKOVÁ Naděžda ŠPONER Jiří

  Article in Periodical

  Nucleic Acids Research, year: 2006, volume: 34, edition: 2

2005

• Non-Watson-Crick base pairing in RNA. Quantum chemical analysis of the cis Watson-Crick/sugar edge base pair family

  ŠPONER Judit E ŠPAČKOVÁ Naděžda KULHÁNEK Petr LESZCZYNSKI Jerzy ŠPONER Jiří

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY A, year: 2005, volume: 109, edition: 10

• Ribosomal RNA Kink-turn motif - a flexible molecular hinge

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Materials Structure in chemistry, biology, physics and technology, year: 2005

2004

• Long-residency hydration, cation binding and dynamics of Loop E/Helix IV rRNA - L25 protein complex

  RÉBLOVÁ Kamila SPACKOVÁ Nadezda KOČA Jaroslav LEONTIS Neocles SPONER Jiri

  Article in Periodical

  Biophysical Journal, year: 2004, volume: 87, edition: 5

• Molecular dynamics simulations of guanine quadruplex loops:Advances and force field limitations

  FADRNÁ Eva ŠPAČKOVÁ Naděžda ŠTEFL Richard KOČA Jaroslav CHEATHAM Thomas E. ŠPONER Jiří

  Article in Periodical

  Biophysical Journal, year: 2004, volume: 87, edition: 1

• Ribosomal RNA Kink-turn Motif - A Flexible Molecular Hinge

  RÁZGA Filip ŠPAČKOVÁ Naďa RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Periodical

  Journal of Biomolecular Structure & Dynamics, year: 2004, volume: 22, edition: 2

• Ribosomal RNA Kink-turn motif - a flexible molecular hinge

  RÁZGA Filip ŠPAČKOVÁ Naděžda RÉBLOVÁ Kamila KOČA Jaroslav LEONTIS Neocles B. ŠPONER Jiří

  Article in Proceedings

  Conference on Current Trends in Computational Chemistry, year: 2004