prof. RNDr. Luděk Matyska, CSc.

Curriculum vitae

Person Identification

• Prof. RNDr. Luděk Matyska, CSc.
  born September 5, 1959, in Brno, Czechoslovakia, married, 3 children

Workplace

• Institute of Computer Science
  and
  Faculty of Informatics
  Botanická 68a
  602 00 Brno
  and also
  CESNET
  Zikova 4
  162 00 Prague
  Czech Republic

Employment Position

• Director of the Institute
  Head of the CERIT-SC Centre
  senior researcher at CESNET

Education and Academic Qualifications

• 2009: Full Professor in Informatics
• 1998: Doc. (Assoc. Prof.), habilitation work "Practical Logic Programming", in Informatics, Faculty of Informatics, Masaryk Univerzity;
• 1994: CSc. (PhD) in Chemical Physics, Slovak Technical University, Bratislava, ``Extended Synthon Model of Organic Chemistry'' University);
• 1992: Scientific attestation IIa (degree equivalent to Associate Professorship);
• 1983: RNDr in Biochemistry (with honors), Faculty of Science, University of Brno, ``Usage of Stop-Flow Methods for the Analysis of Interactions''.

Employment Summary

• 2013 - : Director of the Institute of Computer Science, Masaryk University
• 2011 - : Director of CERIT-SC, Masaryk University
• 2009 - : Professor, Faculty of Informatics
• 2004 - 2012: Vice Director of the Institute of Computer Science, Masaryk University
• 1998 - 2004: Dean of Faculty of Informatics, Brno
• 1998 - 2009: Associate Professor, Faculty of Informatics, Brno
• 1998 - : Senior Researcher, CESNET, z.s.p.o.
• 1994 - : Head of the Supercomputing Centre, Masaryk University
• 1994 - 1998: Vice Director of the Institute of Computer Science, Masaryk University
• 1994 - 1998: Assistant Professor, Faculty of Informatics, Masaryk University
• 1991 - 1994: head of the R&D Department, Institute of Computer Science, Masaryk University, Brno
• 1989 - 1991: senior researcher, Institute of Computer Science, Masaryk University, Brno
• 1984 - 1988: researcher, Institute of Pure Chemicals, Lachema Enterprise, Brno

Pedagogical Activities

• PB001: Introduction to Information Technology
• PA039: Supercomputers and High performance Systems Architecture
• PA160: Net-Centric Computing II
• PB165: Graphs and Networks
• PV109: History of Computer Technology
• PV177: Laboratory of Advanced Network Technologies
• DMPOS: Computer Network Methods
• in the nineties and till 2002 also Logic Programming and Prolog, Programming in Prolog, Computational Methods in Chemistry, Logical Structure of Chemistry
• member and chair of state examination committees in Informatics
• currently 5 PhD students
• 18 PhD graduates
• tens of Masters and Bachelor graduates

Scientific and Research Activities

• High performance networking and computing, large scale parallel and distributed systems, middleware, high performance computing infrastructures, storage, Grids
  Security and trust in distributed systems
  Medical applications of networks and grids
  Multimedia processing and transport over networks
  Haptic interactions

Academical Stays

• 2007: one week invited stay at Academia Sinica Grid Computing center, Taipei, Taiwan
• 2004: two week invited stay at Center for Computing and Technology, Louisiana State University, Baton Rouge, LA, USA
• 1997: one month expert stay at SICS, Stockholm, Sweden.
• 1997: three week expert stay at Swedish Institute of Computer Science (SICS), Stockholm, Sweden.
• 1993: three-month research stay at the Department of Computer Science, School of Informatics, City University of London.
• 1993: two-month research stay at the University of Tennessee, Knoxwille, TN, USA.
• 1992: two-month research stay at the INSA Lyon, France.
• 1992: one-week research stay at the University of Burgundy, Dijon, France.

University Activities

• 2013 - : head of the Scientific Council of Institute of Computer Science, Masaryk University
• 2010 - : member of the Doctoral Board for Informatics at Faculty of Informatics, Masaryk University
• 2006 - 2014: member of the Academic Senate of Masaryk University
• 2006 - 2014: member of the Academic Senate of Faculty of Informatics, Masaryk University
• 1998 - 2004: member of the Scientific Council of Masaryk university, Brno;
• 1998 - 2007, 2009 - 2019: member (head 1998 - 2004) of the Scientific Council of Faculty of Informatics, Masaryk university Brno;
• 1997 - 1998: vice-head of the Academic Senate of Masaryk university;
• 1995 - 1998: head of the Academic Senate of Faculty of Informatics, Masaryk University;
• 1994 - 1998: member of the Academic Senate of Faculty of Informatics, Masaryk University
• 1990 - 1998: member of the Academic Senate of the Masaryk University

Projects

• 2019 - 2023: ``EOSC-Life'', H2020 project (principal investigator: ELIXIR Hub, UK}, head of the Czech research group, workpackage leader, member of the project management Board
• 2019 - 2022: ``EOSC SYNERGY'', H2020 project (principal investigator: CSIS, Spain), head of the Czech research group, workpackage leader, member of the project management Board
• 2018 - 2020: ``EOSC Hub'', H2020 project (principal investigator: EGI.eu), head of the Masaryk University research group, member of the project management Board
• 2018 - 2020: ``DEEP HybridDataCloud'', H2020 project (principal investigator: CSIC), head of the Czech research group, workpackage leader, member of the project management Board
• 2015 - 2019: ``ELIXIR EXCELERATE'', H2020 project (principal investigator: ELIXIR Hub), workpackage leader, member of the project management Board
• 2015 - 2017: ``INDIGO DataCloud'', H2020 project (principal investigator: INFN), head of the Czech research group, workpackage leader, member of the project management Board
• 2015 - 2017: ``EGI ENGAGE'', H2020 EU project (principal investigator: EGI.eu), head of the Czech research group, workpackage leader, member of the project management Board
• 2012 - 2015: ``CHAIN-REDS'', 7FP EU project (principal investigator: INFN), head of the Czech research group, workpackage leader, member of the project management Board
• 2010 - 2012: ``CHAIN'', 7FP EU project (principal investigator: INFN), head of the Czech research group, workpackage leader, member of the project management Board
• 2010 - 2013: ``EMI'', 7FP EU project (principal investigator: CERN), head of the Czech research group
• 2010 - 2014: ``EGI InSPIRE'', 7FP EU project (principal investigator: EGI.eu), head of the Czech research group, workpackage leader, member (and for one term chair) of the project management Board
• 2008 - 2010: ``EUAsiaGrid'', 7FP EU project (principal investigator: INFN), head of the Czech research group, workpackage leader, member of the project management Board
• 2008 - 2010: ``EGEE III'', 7FP EU project (principal investigator: CERN), head of the Czech research group, member of the Project Management Board, representing Central Europe
• 2007 - 2010: ``EGI_DS'', 7FP EU project (principal coordinator: GUP Linz), head of the Czech research group, member of the management Board
• 2006 - 2008: ``EGEE II''. 6FP EU project (principal investigator: CERN), head of the Czech research group, member of the Project Management Board, representing Central Europe; 2007: head of the Project Management Board
• 2005 - 2011: ``Large Scale Distributed and Parallel Systems'', research project/intent, Faculty of Informatics and Institute of Computer Science, Masaryk University, head of the ICS (and part of the FI) research group
• 2005 - 2009: ``MediGrid'', Program Information Society, Academy of Science (principal investigator: MOTOL), head of the CESNET research group
• 2004 - 2008: ``Integrated approach to education of PhD students in the area of parallel and distributed systems'', Grant Agency of the Czech Republic, Faculty of Informatics, Masaryk University (coordinator) and Faculty of Information Technology, Brno University of Technology, investigator, member of the project management
• 2004 - 2008: ``CoreGrid'', 6FP EU Network of Excellence (principal investigator: ERCIM), head of the Czech research group, 2004--2005: head of the Monitoring and Information Systems Virtual Institute
• 2004 - 2006: ``EGEE'', 6FP EU project (principal investigator: CERN), head of the Czech research group, since 2005 member of the Project Management Board, representing Central Europe
• 2004 - 2010: ``Optical Networks and their new Applications'', research project/intent, CESNET, z.s.p.o. (principal co-investigator)
• 2003 - 2006: ``E-learning at Masaryk University'', Ministry of Education and Masaryk University, series of university-wide yearly projects, principal investigator
• 2001 - 2005: ``GridLab'', 5FP EU project (principal investigator: PSNC, Poznan, Poland), head of the Czech research group, workpackage leader, member of the project Management Board
• 2000 - 2003: ``DataGrid'', 5FP EU project (principal investigator: CERN), head of the Czech research group (Associate Contractor)
• 1999 - 2003: ``High Performance Networks nad their Applications'', research project/intent, CESNET, z.s.p.o. (principal co-investigator)
• 1998 - 2000: Ministry of Education Czech Republic, program Infra2, project ``SCB MU -- further development of Supercomputing Centre Brno'', principal investigator
• 1998 - 2003: Grant Agency of Czech Republic, project ``HCILAB -- Laboratory of Human Computer Interactions'', co-investigator
• 1996 - 1998: Ministry of Education Czech Republic, program TEN-34, project ``MetaCentre - the environment for large scale distributed computing'', principal investigator
• 1996 - 1998: Ministry of Education Czech Republic, program TEN-34, project ``High Speed Network TEN-34 CZ'', CESNET, z.s.p.o. (principal co-investigator)
• 1996: Foundation for the Development of Universities in Czech Republic, project ``High Performance Computing in Czech Republic'', principal investigator
• 1995 - 1997: Ministry of Education Czech Republic, program Infra, project ``Brno Academic Computer Network'', co-investigator
• 1995 - 1996: EC Copernicus EXEMPLARY project (canceled due to the bankrupcy of the coordinator site);
• 1994, 1995: Foundation for the Development of Universities in Czech Republic, project ``Use of High Performance Computing Technics at Universities in Czech Republic''.
• 1994-1996: Grant Agency of Czech Republic, supporting the project ``Study of the Conformational Behaviour of Biologically Interesting (Macro)molecules''.
• 1994: Grant Agency of Czech Republic, supporting the project ``Development and implementation of distributed algorithms with applications in computational chemistry''
• 1991, 1992: IBM Academic Initiative (CSFR 1990)
• 1991: Tempus Individual Mobility Grants IMG-CZT-0137-90 (Paris)
• 1987 - 1990: SPZV CSAV ``Modern method in organic chemistry'';

Appreciation of Science Community

• 2005 - 2017: member of the Scientific Council of the Czech National Library
• 2012 - : member of the Scientific Council of the Moravian Regional Library
• 2005 - 2007: member of the Scientific Council of the Research program Information Society, Academy of Science
• 2002 - : member of the Scientific Council of Faculty of Information technology, Brno University of Technology
• 2000 - 2005: member of the Scientific Council of Faculty of Natural Science, Ostrava University
• 1999 - 2017: member of the Scientific Council of Faculty of Applied Sciences, West Bohemian University, Pilsen
  Selected program committee membership:
  
• 2008: general and program committee chair of CESNET08 conference
• 2008: program committee co-chair of MEMICS08 conference
• 2008: program committee member of SERA2008 conference
• 2008: program committee member of ISGC2008 conference
• 2008: program committee member of GVS2008 conference
• 2008: program committee member of 34th EuroMicro conference
• 2007: general and program committee chair of MEMICS07 conference
• 2007: program committee member of CODS2007 conference
• 2007: program committee member of PPAM2007 conference
• 2007: program committee member of CoreGRID symposium
• 2006: program committee member of JVA 2006 conference
• 2006: general and program committee chair of MEMICS06 conference
• 2006: general and program committee chair of CESNET06 conference
• 2006: program committee member of DAPSYS2006 conference
• 2005: program committee member of CoreGRID integration workshop
• 2005: program committee member of PPAM2005 Grid Applications and Middleware Workshop
• 2004: program committee member of AxGrid04 conference
• 2004: member of program committee of HiPC 2004 conference
• 2003: member of program committee of EuroPar 2003 conference
• 2001: member of program committee of Rufis'2001 conference
• 2000: member of program committee of the EGrid international workshop (Poland)
• 1999, 2000: head of program committees of Rufis'99 and Rufis'2000 conferences
• 1995: member of the program committee of the 2nd EuroPVM UGM
• 1988: 1992 program committe secretary of Czechoslovak Logic Programming Winter School and Seminar;
• 1984 - 1990: member of program committe of several Czechoslovak Conferences and Seminars in Computer Aided Organic Synthesis Design

Selected Publications

• FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE/ACM Transactions on Computational Biology and Bioinformatics. Los Alamitos: IEEE Computer Society, 2020, roč. 17, č. 5, s. 1625-1638. ISSN 1545-5963. Dostupné z: https://dx.doi.org/10.1109/TCBB.2019.2907492. URL info
• VÁVRA, Ondřej, Jiří FILIPOVIČ, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Jan ŠTOURAČ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinformatics. Oxford: Oxford University Press, 2019, roč. 35, č. 23, s. 4986-4993. ISSN 1367-4803. Dostupné z: https://dx.doi.org/10.1093/bioinformatics/btz386. Full Text info
• SALOMONI, Davide, Luciano GAIDO, Isabel Campos PLASENCIA, Jesus E Marco de LUCAS, Peter SOLAGNA, Jorge GOMES, Luděk MATYSKA, P FUHRMAN, Marcus HARDT, Giacinto DONVITO, L DUTKA, Marcin Pl o CIENNIK, Roberto BARBERA, Cristina AIFTIMIEI, Ignacio BLANQUER, Andrea CECCANTI, Mario DAVID, Alvaro Lopez GARCIA, German MOLTO, P ORVIZ, Zdeněk SUSTR, M VILJOEN, Fernando AGUILAR, L ALVES, Alexandre BONVING, Riccardo BRUNO, D DAVIDOVIC, Marco FARGETTA, Yen CHEN, Sandro FIORE, Z KURKCUOGLU, L LLORET, J MARTINS, Alessandra NUZZO, Paola NASSISI, J PINA, Eva SCIACCA, Daniele SPIGA, M TANGARO, Michal URBANIAK, Bas WEGH a T ZOK. INDIGO-DataCloud: A platform to facilitate seamless access to e-infrastructures. Journal of Grid Computing. Springer Science+Business Media B.V., 2018, roč. 16, č. 3, s. 381-408. ISSN 1570-7873. Dostupné z: https://dx.doi.org/10.1007/s10723-018-9453-3. URL info
• LINDEN, Mikael, Michal PROCHÁZKA, Ilkka LAPPALAINEN, Dominik František BUČÍK, Pavel VYSKOČIL, Martin KUBA, Sami SILÉN, Peter BELMANN, Alexander SCZYRBA, Steven NEWHOUSE, Luděk MATYSKA a Tommi NYRÖNEN. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. F1000 Research Ltd., 2018, roč. 7, č. 2018, s. 1-16. ISSN 2046-1402. Dostupné z: https://dx.doi.org/10.12688/f1000research.15161.1. URL info
• FILIPOVIČ, Jiří, Ondřej VÁVRA, Jan PLHÁK, David BEDNÁŘ, Sérgio Manuel MARQUES, Jan BREZOVSKÝ, Luděk MATYSKA a Jiří DAMBORSKÝ. CaverDock 1.0. 2017. URL info
• PAZÚRIKOVÁ, Jana, Aleš KŘENEK a Luděk MATYSKA. Guided Optimization Method for Fast and Accurate Atomic Charges Computation. In José Évora-Gómez and José Juan Hernandéz-Cabrera. Proceedings of the 2016 European Simulation and Modelling Conference. Ghent, Belgicko: EUROSIS - ETI, 2016, s. 267-274. ISBN 978-90-77381-95-3. info
• FILIPOVIČ, Jiří, Matúš MADZIN, Jan FOUSEK a Luděk MATYSKA. Optimizing CUDA code by kernel fusion: application on BLAS. The Journal of Supercomputing. Springer US, 2015, roč. 71, č. 10, s. 3934-3957. ISSN 0920-8542. Dostupné z: https://dx.doi.org/10.1007/s11227-015-1483-z. URL info
• HŘEBÍČEK, Jiří, Miroslav KUBÁSEK, Lukáš KOHÚT, Luděk MATYSKA, Lucia TOKÁROVÁ a Jaroslav URBÁNEK. Vědecké výpočty v matematické biologii. Brno: Akademické nakladatelství CERM, 2012, 117 s. ISBN 978-80-7204-781-9. info
• FEIT, Josef, Lukáš HEJTMÁNEK, Michal PROCHÁZKA, Slávek LICEHAMMER a Luděk MATYSKA. Hypertext Atlases of Pathology. 2012. ISSN 0945-6317. Hypertextové atlasy pro výuku patologie info
• PETERLÍK, Igor, Luděk MATYSKA a Jiří FILIPOVIČ. Haptic Interaction with Complex Models Based on Precomputations. Online. In Advances in Haptics. Vukovar (Croatia): IN-TECH, 2010, s. 333-356. ISBN 978-953-307-093-3. info
• HLADKÁ, Eva, Miloš LIŠKA a Luděk MATYSKA. Multimedia Support for Individualized Learning. In Proceedings of the Fifth International Conference on Information Technology Based Higher Education and Training. Istambul, Turkey: IEEE Catalog Number 04EX898, 2004, s. 4-9. ISBN 0-7803-8596-9. info

2020/04/03