Mgr. Aleš Křenek, Ph.D.

Research and development staff II, Community and user Support

correspondence Address:
Šumavská 525/33, 602 00 Brno

office: G308
Šumavská 416/15
602 00 Brno

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phone:	+420 549 49 4212
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Basic information

Type

Total number of publications: 71

2019

West-Life: A Virtual Research Environment for structural biology

MORRIS Chris ANDREETTO Paolo BANCI Lucia BONVIN Alexandre M J J CHOJNOWSKI Grzegorz CANO Laura del CARAZO José Maria CONESA Pablo DAENKE Susan DAMASKOS George GIACHETTI Andrea HALEY Natalie E C HEKKELMAN Maarten L HEUSER Philipp JOOSTEN Robbie P KOUŘIL Daniel KŘENEK Aleš KULHÁNEK Tomáš LAMZIN Victor S NADZIRIN Nurul PERRAKIS Anastassis ROSATO Antonio SANDERSON Fiona SEGURA Joan SCHAARSCHMIDT Joerg SOBOLEV Egor TRALDI Sergio TRELLET Mikael E VELANKAR Sameer VERLATO Marco WINN Martyn

Article in Periodical

Journal of Structural Biology: X, year: 2019, volume: 1, edition: January - March 2019, DOI

2018

Acceleration of Mean Square Distance Calculations with Floating Close Structure in Metadynamics Simulations

PAZÚRIKOVÁ Jana OĽHA Jaroslav KŘENEK Aleš SPIWOK Vojtěch

Research report

Year: 2018

2017

Identification of "BRAF-Positive" Cases Based on Whole-Slide Image Analysis

POPOVICI Vlad KŘENEK Aleš BUDINSKÁ Eva

Article in Periodical

Biomed Research International, year: 2017, volume: Neuveden, edition: April, DOI
Reducing the number of mean-square deviation calculations with floating close structure in metadynamics

PAZÚRIKOVÁ Jana KŘENEK Aleš SPIWOK Vojtěch ŠIMKOVÁ Mária

Article in Periodical

Journal of Chemical Physics, year: 2017, volume: 146, edition: 11, DOI

2016

Accelerated RMSD Calculation for Molecular Metadynamics

FILIPOVIČ Jiří PAZÚRIKOVÁ Jana KŘENEK Aleš SPIWOK Vojtěch

Article in Proceedings

Proceedings of the 2016 European Simulation and Modelling Conference, year: 2016
Direct SAXS Curve Fitting with an Ensable of Conformations

KŘENEK Aleš RAČEK Tomáš PAZÚRIKOVÁ Jana

Appeared in Conference without Proceedings

Year: 2016, type: Appeared in Conference without Proceedings
Guided Optimization Method for Fast and Accurate Atomic Charges Computation

PAZÚRIKOVÁ Jana KŘENEK Aleš MATYSKA Luděk

Article in Proceedings

Proceedings of the 2016 European Simulation and Modelling Conference, year: 2016
NEEMP – nástroj pro parametrizaci EEM

RAČEK Tomáš SVOBODOVÁ VAŘEKOVÁ Radka KŘENEK Aleš PAZÚRIKOVÁ Jana GEIDL Stanislav KOČA Jaroslav

Conference abstract

Year: 2016, type: Conference abstract
NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges

RAČEK Tomáš PAZÚRIKOVÁ Jana SVOBODOVÁ VAŘEKOVÁ Radka GEIDL Stanislav KŘENEK Aleš FALGINELLA Francesco Luca HORSKÝ Vladimír HEJRET Václav KOČA Jaroslav

Article in Periodical

Journal of Cheminformatics, year: 2016, volume: 8, edition: October, DOI
Parametrizace ekvalizace elektronegativity metodou diferenciální evoluce

PAZÚRIKOVÁ Jana RAČEK Tomáš GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka KŘENEK Aleš

Conference abstract

Year: 2016, type: Conference abstract