doc. Ing. Matej Lexa, Ph.D.

2021

• Patients With Common Variable Immunodeficiency (CVID) Show Higher Gut Bacterial Diversity and Levels of Low-Abundance Genes Than the Healthy Housemates

  BOSÁK Juraj LEXA Matej FIEDOROVÁ Kristýna GADARA Darshak Chandulal MICENKOVÁ Lenka SPÁČIL Zdeněk LITZMAN Jiří FREIBERGER Tomáš ŠMAJS David

  Article in Periodical

  Frontiers in Immunology, year: 2021, volume: 12, edition: May 2021, DOI

• SARS-CoV-2 hot-spot mutations are significantly enriched within inverted repeats and CpG island loci

  GOSWAMI Pratik BARTAS Martin LEXA Matej BOHÁLOVÁ Natália VOLNÁ Adriana ČERVEŇ Jiří ČERVEŇOVÁ Veronika PEČINKA Petr ŠPUNDA Vladimír FOJTA Miroslav BRÁZDA Václav

  Article in Periodical

  Briefings in Bioinformatics, year: 2021, volume: 22, edition: 2, DOI

2020

• pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm

  LABUDOVÁ Dominika HON Jiří LEXA Matej

  Article in Periodical

  Bioinformatics, year: 2020, volume: 36, edition: 8, DOI

• TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting

  LEXA Matej JEDLICKA Pavel VANÁT Ivan ČERVEŇANSKÝ Michal KEJNOVSKÝ Eduard

  Article in Periodical

  Bioinformatics, year: 2020, volume: 36, edition: 20, DOI

• What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?

  JEDLICKA Pavel LEXA Matej KEJNOVSKÝ Eduard

  Article in Periodical

  Frontiers in Plant Science, year: 2020, volume: 11, edition: 644, DOI

2019

• Bacterial and fungal gut microbiota analysis in common variable immunodeficiency (CVID) disorders: paired case-control study

  FIEDOROVÁ Kristýna RADVANSKÝ Matěj BOSÁK Juraj GROMBIŘÍKOVÁ Hana NĚMCOVÁ Eva KRÁLÍČKOVÁ Pavlína ČERNOCHOVÁ Michaela KOTÁSKOVÁ Iva LEXA Matej LITZMAN Jiří ŠMAJS David FREIBERGER Tomáš

  Conference abstract

  Year: 2019, type: Conference abstract

• Bacterial but Not Fungal Gut Microbiota Alterations Are Associated With Common Variable Immunodeficiency (CVID) Phenotype

  FIEDOROVÁ Kristýna RADVANSKÝ Matěj BOSÁK Juraj GROMBIŘÍKOVÁ Hana NĚMCOVÁ Eva KRÁLÍČKOVÁ Pavlina ČERNOCHOVÁ Michaela KOTÁSKOVÁ Iva LEXA Matej LITZMAN Jiří ŠMAJS David FREIBERGER Tomáš

  Article in Periodical

  Frontiers in Immunology, year: 2019, volume: 10, edition: 1914, DOI

• Gut microbiome analysis in common variable immunodeficiency (CVID) patients and paired healthy controls sharing the same household

  FIEDOROVÁ Kristýna RADVANSKÝ Matěj KRÁLÍČKOVÁ Pavlína ČERNOCHOVÁ Michaela NĚMCOVÁ Eva GROMBIŘÍKOVÁ Hana BOSÁK Juraj LEXA Matej ŠMAJS David LITZMAN Jiří FREIBERGER Tomáš

  Conference abstract

  Year: 2019, type: Conference abstract

• High-throughput analysis revealed mutations' diverging effects on SMN1 exon 7 splicing

  SOUČEK Přemysl RÉBLOVÁ Kamila KRAMÁREK Michal RADOVÁ Lenka GRYMOVÁ Tereza HUJOVÁ Pavla KOVÁČOVÁ Tatiana LEXA Matej GRODECKÁ Lucie FREIBERGER Tomáš

  Article in Periodical

  RNA BIOLOGY, year: 2019, volume: 16, edition: 10, DOI

• Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study

  JEDLIČKA Pavel LEXA Matej VANÁT Ivan KEJNOVSKÝ Eduard HOBZA Roman

  Article in Periodical

  Mobile DNA, year: 2019, volume: 10, edition: 1, DOI