doc. RNDr. David Šafránek, Ph.D.

2017

• PITHYA: High-Performance Parameter Synthesis for Biological Models

  BRIM Luboš BENEŠ Nikola ŠAFRÁNEK David DEMKO Martin PASTVA Samuel HAJNAL Matej

  Appeared in Conference without Proceedings

  Year: 2017, type: Appeared in Conference without Proceedings

2016

• A Model Checking Approach to Discrete Bifurcation Analysis

  BENEŠ Nikola BRIM Luboš DEMKO Martin PASTVA Samuel ŠAFRÁNEK David

  Article in Proceedings

  Formal Methods. FM 2016, year: 2016

• Biochemical Space: A Language for Formal Description and Annotation of Complex Biological Processes

  TROJÁK Matej DĚD Tadeáš ŠAFRÁNEK David KLEMENT Matej ČERVENÝ Jan ROMANOVSKÁ Františka

  Appeared in Conference without Proceedings

  Year: 2016, type: Appeared in Conference without Proceedings

• E-Cyanobacterium.org: A Web-Based Platform for Systems Biology of Cyanobacteria

  TROJÁK Matej ŠAFRÁNEK David HRABEC Jakub ŠALAGOVIČ Jakub ROMANOVSKÁ Františka ČERVENÝ Jan

  Article in Proceedings

  Computational Methods in Systems Biology. CMSB 2016., year: 2016

• E-cyanobacterium.org: A Web-based Platform for Systems Biology of Cyanobacteria

  TROJÁK Matej ŠAFRÁNEK David HRABEC Jakub ŠALAGOVIČ Jakub ČERVENÝ Jan HAJNAL Matej

  Year: 2016

• Formal Biochemical Space with Semantics in Kappa and BNGL

  DĚD Tadeáš ŠAFRÁNEK David TROJÁK Matej KLEMENT Matej ŠALAGOVIČ Jakub BRIM Luboš

  Article in Proceedings

  The 6th International Workshop on Static Analysis and Systems Biology, SASB 2015, year: 2016

• High-Performance Symbolic Parameter Synthesis of Biological Models: A Case Study

  DEMKO Martin BENEŠ Nikola BRIM Luboš PASTVA Samuel ŠAFRÁNEK David

  Article in Proceedings

  Computational Methods in Systems Biology. CMSB 2016., year: 2016

• Parallel SMT-Based Parameter Synthesis with Application to Piecewise Multi-Affine Systems

  BENEŠ Nikola BRIM Luboš DEMKO Martin PASTVA Samuel ŠAFRÁNEK David

  Article in Proceedings

  Automated Technology for Verification and Analysis. ATVA 2016, year: 2016

• Toward Modelling and Analysis of Transient and Sustained Behaviour of Signalling Pathways

  HAJNAL Matej ŠAFRÁNEK David DEMKO Martin PASTVA Samuel KREJČÍ Pavel BRIM Luboš

  Article in Proceedings

  Hybrid Systems Biology. HSB 2016, year: 2016

2015

• Coloured Model Checking Approach to Parameter Synthesis for Executable Models in Synthetic Biology

  BRIM Luboš DEMKO Martin PASTVA Samuel ŠAFRÁNEK David

  Conference abstract

  Year: 2015, type: Conference abstract