doc. RNDr. Karel Berka, Ph.D.

2017

• Cytochrome P450 structure anatomy – recognition and analysis of secondary structure elements

  MIDLIK Adam SVOBODOVÁ VAŘEKOVÁ Radka NAVRÁTILOVÁ Veronika BERKA Karel KOČA Jaroslav

  Conference abstract

  Year: 2017, type: Conference abstract

• LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

  SEHNAL David DESHPANDE Mandar SVOBODOVÁ VAŘEKOVÁ Radka MIR Saqib BERKA Karel MIDLIK Adam PRAVDA Lukáš VELANKAR Sameer KOČA Jaroslav

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI

• Mapping and 2D visualization of secondary structure elements in cytochromes

  HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan SVOBODOVÁ VAŘEKOVÁ Radka BERKA Karel

  Conference abstract

  Year: 2017, type: Conference abstract

2016

• Automatická anotácia sekundárnych štruktúr v cytochrómoch P450 a hodnotenie ich štruktúrnej podobnosti

  MIDLIK Adam BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav

  Conference abstract

  Year: 2016, type: Conference abstract

• Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases

  KOČA Jaroslav SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš BERKA Karel GEIDL Stanislav SEHNAL David OTYEPKA Michal

  Monograph

  Year: 2016, edition: Vyd. 1., number of pages: 144 s.

2015

• Anatomy of protein channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria OTYEPKA Michal KOČA Jaroslav

  Conference abstract

  Year: 2015, type: Conference abstract

• MOLE 2.5: Improved Tool for Analysis of Ligand-Accessible Channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

2014

• Anatomy of enzymatic channels and algorithm for its detection

  PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Anatomy of Enzyme Channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David BANÁŠ Pavel ROMAN A Laskowski KOČA Jaroslav OTYEPKA Michal

  Article in Periodical

  BMC Bioinformatics, year: 2014, volume: 15, edition: november, DOI

• MOLE: Pokročilý nástroj pro vyhledávání a charakterizaci tunelů

  PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings