RNDr. Vladimír Ulman, Ph.D.

2023

• ImgLib2 and BigDataViewer Hackathon Brno

  EŠNER Milan ULMAN Vladimír NORLIN Nils SEKANINOVÁ Ivana JANÍČKOVÁ Eliška

  Popularization text

  Year: 2023, type: Popularization text

• The Cell Tracking Challenge: 10 years of objective benchmarking

  MAŠKA Martin ULMAN Vladimír DELGADO-RODRIGUEZ Pablo GÓMEZ-DE-MARISCAL Estibaliz NEČASOVÁ Tereza PENA Fidel A Guerrero REN Tsang Ing MEYEROWITZ Elliot M SCHERR Tim LÖFFLER Katharina MIKUT Ralf GUO Tianqi WANG Yin ALLEBACH Jan P BAO Rina AL-SHAKARJI Noor M RAHMON Gani TOUBAL Imad Eddine PALANIAPPAN Kannappan LUX Filip MATULA Petr SUGAWARA Ko MAGNUSSON Klas E G AHO Layton COHEN Andrew R ARBELLE Assaf BEN-HAIM Tal RAVIV Tammy Riklin ISENSEE Fabian JÄGER Paul F MAIER-HEIN Klaus H ZHU Yanming EDERRA Cristina URBIOLA Ainhoa MEIJERING Erik CUNHA Alexandre MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLÓRZANO Carlos

  Article in Periodical

  Nature Methods, year: 2023, volume: 20, edition: 7, DOI

2022

• Review of cell image synthesis for image processing

  ULMAN Vladimír WIESNER David

  Chapter of a book

  Biomedical Image Synthesis and Simulation - Methods and Applications, edition: Vyd. 1st ed., year: 2022, number of pages: 43 s.

2020

• Regionalized tissue fluidization is required for epithelial gap closure during insect gastrulation

  JAIN Akanksha ULMAN Vladimír MUKHERJEE Argo PRAKASH Mangal PIMPALE Lokesh MÜNSTER Stefan KRISTEN Panfilio JUG Florian GRILL Stephan TOMANCAK Pavel PAVLOPOULOS Anastasios

  Article in Periodical

  Nature Communications, year: 2020, volume: 11, DOI

2019

• A Behavioral Assay to Study Effects of Retinoid Pharmacology on Nervous System Development in a Marine Annelid

  HANDBERG-THORSAGER Mette ULMAN Vladimír TOMANČÁK Pavel ARENDT D. SCHUBERT M.

  Chapter of a book

  Retinoid and Rexinoid Signaling, year: 2019

• Automatic Fusion of Segmentation and Tracking Labels

  AKBAŞ Cem Emre ULMAN Vladimír MAŠKA Martin JUG Florian KOZUBEK Michal

  Article in Proceedings

  Computer Vision – ECCV 2018 Workshops, year: 2019

• Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy

  MAŠKA Martin NEČASOVÁ Tereza WIESNER David SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David

  Article in Proceedings

  26th IEEE International Conference on Image Processing, year: 2019

2018

• FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia

  SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David NEČASOVÁ Tereza MORGAENKO Katsiarina EISELLEOVÁ Lívia TESAŘOVÁ Lenka MAŠKA Martin

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2018, volume: 37, edition: 12, DOI

• Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia

  PETERLÍK Igor SVOBODA David ULMAN Vladimír SOROKIN Dmitry MAŠKA Martin

  Article in Proceedings

  Simulation and Synthesis in Medical Imaging, year: 2018

2017

• An objective comparison of cell-tracking algorithms

  ULMAN Vladimír MAŠKA Martin MAGNUSSON Klas E G RONNEBERGER Olaf HAUBOLD Carsten HARDER Nathalie MATULA Pavel MATULA Petr SVOBODA David RADOJEVIC Miroslav SMAL Ihor ROHR Karl JALDÉN Joakim BLAU Helen M DZYUBACHYK Oleh LELIEVELDT Boudewijn XIAO Pengdong LI Yuexiang CHO Siu-Yeung DUFOUR Alexandre C OLIVO-MARIN Jean-Christophe REYES-ALDASORO Constantino C SOLIS-LEMUS Jose A BENSCH Robert BROX Thomas STEGMAIER Johannes MIKUT Ralf WOLF Steffen HAMPRECHT Fred A ESTEVES Tiago QUELHAS Pedro DEMIREL Ömer MALMSTRÖM Lars JUG Florian TOMANCAK Pavel MEIJERING Erik MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI