doc. RNDr. Martin Maška, Ph.D.

2023

• Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy

  HRADECKÁ Lucia WIESNER David SUMBAL Jakub SUMBALOVÁ KOLEDOVÁ Zuzana MAŠKA Martin

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2023, volume: 42, edition: 1, DOI

• The Cell Tracking Challenge: 10 years of objective benchmarking

  MAŠKA Martin ULMAN Vladimír DELGADO-RODRIGUEZ Pablo GÓMEZ-DE-MARISCAL Estibaliz NEČASOVÁ Tereza PENA Fidel A Guerrero REN Tsang Ing MEYEROWITZ Elliot M SCHERR Tim LÖFFLER Katharina MIKUT Ralf GUO Tianqi WANG Yin ALLEBACH Jan P BAO Rina AL-SHAKARJI Noor M RAHMON Gani TOUBAL Imad Eddine PALANIAPPAN Kannappan LUX Filip MATULA Petr SUGAWARA Ko MAGNUSSON Klas E G AHO Layton COHEN Andrew R ARBELLE Assaf BEN-HAIM Tal RAVIV Tammy Riklin ISENSEE Fabian JÄGER Paul F MAIER-HEIN Klaus H ZHU Yanming EDERRA Cristina URBIOLA Ainhoa MEIJERING Erik CUNHA Alexandre MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLÓRZANO Carlos

  Article in Periodical

  Nature Methods, year: 2023, volume: 20, edition: 7, DOI

2020

• BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

  RUBENS Ulysse MORMONT Romain PAAVOLAINEN Lassi BÄCKER Volker PAVIE Benjamin SCHOLZ Leandro A. MICHIELS Gino MAŠKA Martin ÜNAY Devrim BALL Graeme HOYOUX Renaud VANDAELE Rémy GOLANI Ofra STANCIU Stefan G. SLADOJE Natasa PAUL-GILLOTEAUX Perrine MARÉE Raphaël TOSI Sébastien

  Article in Periodical

  Patterns, year: 2020, volume: 1, edition: 3, DOI

2019

• 3-D Quantification of Filopodia in Motile Cancer Cells

  CASTILLA Carlos MAŠKA Martin SOROKIN Dmitry MEIJERING Erik ORTIZ-DE-SOLÓRZANO Carlos

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2019, volume: 38, edition: 3, DOI

• Automatic Fusion of Segmentation and Tracking Labels

  AKBAŞ Cem Emre ULMAN Vladimír MAŠKA Martin JUG Florian KOZUBEK Michal

  Article in Proceedings

  Computer Vision – ECCV 2018 Workshops, year: 2019

• CytoPacq: A web-interface for simulating multi-dimensional cell imaging

  WIESNER David SVOBODA David MAŠKA Martin KOZUBEK Michal

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 21, DOI

• Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

  GÓMEZ-DE-MARISCAL Estibaliz MAŠKA Martin KOTRBOVÁ Anna POSPÍCHALOVÁ Vendula MATULA Pavel MUNOZ-BARRUTIA Arrate

  Article in Periodical

  Scientific Reports, year: 2019, volume: 9, edition: 13211, DOI

• TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images

  KOTRBOVÁ Anna ŠTĚPKA Karel MAŠKA Martin PÁLENIK Juraj ILKOVICS Ladislav KLEMOVÁ Dobromila KRAVEC Marek HUBATKA František DAVE Zankruti HAMPL Aleš BRYJA Vítězslav MATULA Pavel POSPÍCHALOVÁ Vendula

  Article in Periodical

  Journal of Extracellular Vesicles, year: 2019, volume: 8, edition: 1, DOI

• Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy

  MAŠKA Martin NEČASOVÁ Tereza WIESNER David SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David

  Article in Proceedings

  26th IEEE International Conference on Image Processing, year: 2019

2018

• FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia

  SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David NEČASOVÁ Tereza MORGAENKO Katsiarina EISELLEOVÁ Lívia TESAŘOVÁ Lenka MAŠKA Martin

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2018, volume: 37, edition: 12, DOI