RNDr. Nikola Beneš, Ph.D.
Assistant professor, Department of Computer Systems and Communications
office: B421
Botanická 554/68a
602 00 Brno
phone: | +420 549 49 7287 |
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social and academic networks: |
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Total number of publications: 66
2024
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BNClassifier: Classifying Boolean Models by Dynamic Properties
Computational Methods in Systems Biology, year: 2024
2023
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Boolean network sketches: a unifying framework for logical model inference
Bioinformatics, year: 2023, volume: 39, edition: 4, DOI
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Phenotype Control of Partially Specified Boolean Networks
Computational Methods in Systems Biology, year: 2023
2022
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AEON.py: Python library for attractor analysis in asynchronous Boolean networks
BIOINFORMATICS, year: 2022, volume: 38, edition: 21, DOI
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BDD-Based Algorithm for SCC Decomposition of Edge-Coloured Graphs
Logical Methods in Computer Science, year: 2022, volume: 18, edition: 1, DOI
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Exploring attractor bifurcations in Boolean networks
BMC Bioinformatics, year: 2022, volume: 23, edition: 173, DOI
2021
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Aeon 2021: Bifurcation Decision Trees in Boolean Networks
International Conference on Computational Methods in Systems Biology (CMSB 2021), year: 2021
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Computing Bottom SCCs Symbolically Using Transition Guided Reduction
Computer Aided Verification - 33rd International Conference, CAV 2021, year: 2021
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Symbolic Coloured SCC Decomposition
Tools and Algorithms for the Construction and Analysis of Systems, 27th International Conference, TACAS 2021, year: 2021
2020
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AEON: Attractor Bifurcation Analysis of Parametrised Boolean Networks
Computer Aided Verification. CAV 2020, year: 2020