doc. Mgr. Lukáš Trantírek, Ph.D.

2025

• In-cell NMR spectroscopy of nucleic acids: Basic concepts, practical aspects, and applications

  TRANTÍRKOVÁ Silvie HARNOŠ Jakub RYNEŠ Jan ZLÍNSKÁ Vladimíra TRANTÍREK Lukáš

  Article in Periodical

  Progress in Nuclear Magnetic Resonance Spectroscopy, year: 2025, volume: 148-149, edition: August-October, DOI

• Protein structure and interactions elucidated with in-cell NMR for different cell cycle phases and in 3D human tissue models

  RYNEŠ Jan IŠTVÁNKOVÁ Eva KRAFČÍKOVÁ Michaela LUCHINAT Enrico BARBIERI Letizia BANCI Lucia KAMARÝTOVÁ Kristýna LOJA Tomáš FAFÍLEK Bohumil RICO LLANOS Gustavo KREJČÍ Pavel MACUREK Libor TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš

  Article in Periodical

  Communications Biology, year: 2025, volume: 8, edition: 1, DOI

• Specific inhibition of fibroblast growth factor receptor 1 signaling by a DNA aptamer

  ZLÍNSKÁ Vladimíra FEKETOVÁ Zuzana CZYREK Aleksandra Anna CHUDZIAN Julia ZIVKOVIC Martina Lenarcic URSACHI Vlad-Constantin DUDEJA Pooja FAFÍLEK Bohumil RYNEŠ Jan RICO LLANOS Gustavo KOUDELKA Adolf ROY Tanaya BIADUN Martyna RAŠKOVÁ Vendula SVOZILOVÁ Kateřina STROBLOVÁ Michaela KRZYSCIK Mateusz HRISTOVA Kalina KROWARSCH Daniel TRANTÍRKOVÁ Silvie ZAKRZEWSKA Malgorzata TRANTÍREK Lukáš KREJČÍ Pavel

  Article in Periodical

  MOLECULAR THERAPY-NUCLEIC ACIDS, year: 2025, volume: 36, edition: 1, DOI

2024

• A sodium/potassium switch for G4-prone G/C-rich sequences

  LUO Yu LENARČIČ ŽIVKOVIC Martina WANG Jiawei RYNEŠ Jan TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš VERGA Daniela MERGNY Jean-Louis

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: 1, DOI

• DNA Quadruplex Structure with a Unique Cation Dependency

  GAJARSKÝ Martin STADLBAUER Petr SPONER Jiri CUCCHIARINI Anne Pauline Marie DOBROVOLNA Michaela BRAZDA Vaclav MERGNY Jean-Louis TRANTÍREK Lukáš LENARČIČ ŽIVKOVIC Martina

  Article in Periodical

  Angewandte Chemie International Edition, year: 2024, volume: 63, edition: 7, DOI

• In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells

  VÍŠKOVÁ Pavlína IŠTVÁNKOVÁ Eva RYNEŠ Jan DŽATKO Šimon LOJA Tomáš LENARČIČ ŽIVKOVIC Martina RIGO Riccardo EL-KHOURY Roberto SERRANO-CHACON Israel DAMHA Masad J GONZALEZ Carlos MERGNY Jean-Louis TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš

  Article in Periodical

  Nature Communications, year: 2024, volume: 15, edition: 1, DOI

• RNA G-quadruplex formation in biologically important transcribed regions: can two-tetrad intramolecular RNA quadruplexes be formed?

  BASU Pritha KEJNOVSKA Iva GAJARSKÝ Martin ŠUBERT Denis MIKEŠOVÁ Tereza RENCIUK Daniel TRANTÍREK Lukáš MERGNY Jean-Louis VORLICKOVA Michaela

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: 21, DOI

• Structural Optimization of Azacryptands for Targeting Three-Way DNA Junctions

  PIPIER Angélique CHETOT Titouan KALAMATIANOU Apollonia MARTIN Nicolas CAROFF Maëlle BRITTON Sébastien CHÉRON Nicolas TRANTÍREK Lukáš GRANZHAN Anton MONCHAUD David

  Article in Periodical

  ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, year: 2024, volume: 63, edition: 36, DOI

2023

• A thermosensitive gel matrix for bioreactor-assisted in-cell NMR of nucleic acids and proteins

  DZUROV Matej POSPÍŠILOVÁ Šárka KRAFČÍKOVÁ Michaela TRANTÍREK Lukáš VOJTOVÁ Lucy RYNEŠ Jan

  Article in Periodical

  Journal of biomolecular NMR, year: 2023, volume: 77, edition: 5-6, DOI

• DNA i-motif formation at neutral pH is driven by kinetic partitioning

  ŠKOLÁKOVÁ Petra GAJARSKÝ Martin PALACKÝ Jan ŠUBERT Denis RENČIUK Daniel TRANTÍREK Lukáš MERGNY Jean-Louis VORLICKOVA Michaela

  Article in Periodical

  Nucleic Acids Research, year: 2023, volume: 51, edition: 6, DOI