A novel assessment of whole-mount Gleason grading in prostate cancer to identify candidates for radical prostatectomy: a machine learning-based multiomics

• Authors: NING Jing; SPIELVOGEL Clemens P; HABERL David; TRACHTOVÁ Karolína; STOIBER Stefan; RASUL Sazan; BYSTRÝ Vojtěch; WASINGER Gabriel; BALTZER Pascal; GURNHOFER Elisabeth; TIMELTHALER Gerald; SCHLEDERER Michaela; PAPP Laszlo; SCHACHNER Helga; HELBICH Thomas; HARTENBACH Markus; GRUBMUELLER Bernhard; SHARIAT Shahrokh F; HACKER Marcus; HAUG Alexander; KENNER Lukas
• Year of publication: 2024
• Type: Article in Periodical
• Magazine / Source: Theranostics
• MU Faculty or unit: Central European Institute of Technology
• web: https://www.thno.org/v14p4570.htm
• Doi: http://dx.doi.org/10.7150/thno.96921
• Keywords: prostate cancer; PSMA; Gleason grading; machine learning; multiomics
• Description: Purpose: : This study aims to assess whole-mount Gleason grading (GG) in prostate cancer (PCa) accurately using a multiomics machine learning (ML) model and to compare its performance with biopsy-proven GG (bxGG) assessment. Materials and Methods: : A total of 146 patients with PCa recruited in a pilot study of a prospective clinical trial (NCT02659527) were retrospectively included in the side study, all of whom underwent 68 Ga-PSMA-11 integrated positron emission tomography (PET) / magnetic resonance (MR) before radical prostatectomy (RP) between May 2014 and April 2020. To establish a multiomics ML model, we quantified PET radiomics features, pathway-level genomics features from whole exome sequencing, and pathomics features derived from immunohistochemical staining of 11 biomarkers. Based on the multiomics dataset, five ML models were established and validated using 100-fold Monte Carlo cross-validation. Results: : Among five ML models, the random forest (RF) model performed best in terms of the area under the curve (AUC). Compared to bxGG assessment alone, the RF model was superior in terms of AUC (0.87 vs 0.75), specificity (0.72 vs 0.61), positive predictive value (0.79 vs 0.75), and accuracy (0.78 vs 0.77) and showed slightly decreased sensitivity (0.83 vs 0.89) and negative predictive value (0.80 vs 0.81). Among the feature categories, bxGG was identified as the most important feature, followed by pathomics, clinical, radiomics and genomics features. The three important individual features were bxGG, PSA staining and one intensity-related radiomics feature. Conclusion: : The findings demonstrate a superior assessment of the developed multiomics-based ML model in whole-mount GG compared to the current clinical baseline of bxGG. This enables personalized patient management by identifying high-risk PCa patients for RP.