Publication details

Conformational Transitions of Flanking Purines in HIV-1 RNA Dimerization Initiation Site Kissing Complexes Studied by Charmm Explicit Solvent Molecular Dynamics

Authors

SARZYNSKA Joanna REBLOVA Kamila SPONER Jiri KULINSKI Tadeusz

Year of publication 2008
Type Article in Periodical
Magazine / Source Biopolymers
MU Faculty or unit

Faculty of Science

Citation
Field Biophysics
Keywords molecular dynamics methods; RNA
Description Study of flanking bases in RNA kissing loop complexes using Charmm force field shows good agreement with experiments carried out by Amber and with X-ray crystalography. The study describes multiple conformations, which flanking bases may adopt on nanosecond time scale.
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