CAVER 2.0

• Authors: MEDEK Petr; BENEŠ Petr; KOZLÍKOVÁ Barbora; CHOVANCOVÁ Eva; PAVELKA Antonín; SZABÓ Tibor; ZAMBORSKÝ Matúš; ANDRES Filip; KLVAŇA Martin; BREZOVSKÝ Jan; SOCHOR Jiří; DAMBORSKÝ Jiří
• Year of publication: 2008
• Type: Software
• MU Faculty or unit: Faculty of Science
• web: http://loschmidt.chemi.muni.cz/caver/
• Description: CAVER provides rapid, accurate and fully automated calculation of pathways leading from buried cavities to outside solvent in protein structures. Study of these pathways is important in drug design and molecular enzymology. CAVER facilitates analysis of any molecular structure including proteins, nucleic acids, inorganic materials, and is available as online version or PyMOL plugin. CAVER Viewer enables efficient visualization of calculated pathways and can be run online using Java Web Start technology.

Related projects

• Interactions among the chemicals, environment and biological systems and their consequences on the global, regional and local scales (INCHEMBIOL)
• New approaches in electrochemical analysis of nucleic acids and oligonucleotides aimed at a ultrasensitive microdetection of DNA and DNA hybridization
• Center of Biocatalysis and Biotransformation
• Visualization of protein structures