Publication details

Theoretical Studies on the Intermolecular Interactions of Potentially Primordial Base-Pair Analogues

Authors

ŠPONER Judit VAZQUEZ-MAYAGOITIA Alvaro SUMPTER Bobby LESZCZYNSKI Jerzy ŠPONER Jiří OTYEPKA Michal BANÁŠ Pavel FUENTES-CABRERA Miguel

Year of publication 2010
Type Article in Periodical
Magazine / Source Chemistry – A European Journal
MU Faculty or unit

Faculty of Science

Citation
Field Physical chemistry and theoretical chemistry
Keywords quantum chemistry; base pairing; molecular dynamics
Description Recent experimental studies on the Watson Crick type base pairing of triazine and aminopyrimidine derivatives suggest that acid/base properties of the constituent bases might be related to the duplex stabilities measured in solution. Herein we use high-level quantum chemical calculations and molecular dynamics simulations to evaluate the base pairing and stacking interactions of seven selected base pairs, which are common in that they are stabilized by two N_H O hydrogen bonds separated by one N_H N hydrogen bond.
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