Mgr. Jan Ryneš, Ph.D.

2024

• A sodium/potassium switch for G4-prone G/C-rich sequences

  LUO Yu LENARČIČ ŽIVKOVIC Martina WANG Jiawei RYNEŠ Jan TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš VERGA Daniela MERGNY Jean-Louis

  Article in Periodical

  Nucleic acids research, year: 2024, volume: 52, edition: 1, DOI

• In-cell NMR suggests that DNA i-motif levels are strongly depleted in living human cells

  VÍŠKOVÁ Pavlína IŠTVÁNKOVÁ Eva RYNEŠ Jan DŽATKO Šimon LOJA Tomáš LENARČIČ ŽIVKOVIC Martina RIGO Riccardo EL-KHOURY Roberto SERRANO-CHACON Israel DAMHA Masad J GONZALEZ Carlos MERGNY Jean-Louis TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš

  Article in Periodical

  Nature Communications, year: 2024, volume: 15, edition: 1, DOI

2023

• A thermosensitive gel matrix for bioreactor-assisted in-cell NMR of nucleic acids and proteins

  DZUROV Matej POSPÍŠILOVÁ Šárka KRAFČÍKOVÁ Michaela TRANTÍREK Lukáš VOJTOVÁ Lucy RYNEŠ Jan

  Article in Periodical

  Journal of biomolecular NMR, year: 2023, volume: 77, edition: 5-6, DOI

2020

• Composite 5-methylations of cytosines modulate i-motif stability in a sequence-specific manner: Implications for DNA nanotechnology and epigenetic regulation of plant telomeric DNA

  ŠKOLÁKOVÁ Petra BADRI Zahra TRANTÍRKOVÁ Silvie RYNEŠ Jan ŠPONER Jiří FOJTOVÁ Miloslava FAJKUS Jiří MAREK Radek VORLÍČKOVÁ Michaela MERGNY Jean-Louis TRANTÍREK Lukáš

  Article in Periodical

  BBA - General Subjects, year: 2020, volume: 1864, edition: 9, DOI

• Elucidation of protein interactions necessary for the maintenance of the BCR-ABL signaling complex

  GREGOR Tomáš BOSÁKOVÁ Michaela NITĂ Alexandru POOVAKULATHU ABRAHAM Sara FAFÍLEK Bohumil ČERNOHORSKÁ Nicole RYNEŠ Jan TRANTÍRKOVÁ Silvie ŽÁČKOVÁ Daniela MAYER Jiří TRANTÍREK Lukáš KREJČÍ Pavel

  Article in Periodical

  Cellular and molecular life sciences, year: 2020, volume: 77, edition: 19, DOI

2019

• Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1

  HARNOŠ Jakub CANIZAL M.C.A. JURÁSEK Miroslav KUMAR Jitender HOLLER Cornelia SCHAMBONY Alexandra HANÁKOVÁ Kateřina BERNATÍK Ondřej ZDRÁHAL Zbyněk GÖMÖRYOVÁ Kristína GYBEĽ Tomáš RADASZKIEWICZ Tomasz Witold KRAVEC Marek TRANTÍREK Lukáš RYNEŠ Jan DAVE Zankruti FERNANDEZ-LLAMAZARES Ana Iris VÁCHA Robert TRIPSIANES Konstantinos HOFFMANN Carsten BRYJA Vítězslav

  Article in Periodical

  Nature Communications, year: 2019, volume: 10, edition: APR 18 2019, DOI

2018

• Advances in the cellular structural biology of nucleic acids

  GIASSA Ilektra-Chara RYNEŠ Jan FESSL T. TRANTÍRKOVÁ Silvie TRANTÍREK Lukáš

  Article in Periodical

  FEBS LETTERS, year: 2018, volume: 592, edition: 12, DOI

• Analysis of binding interfaces of the human scaffold protein AXIN1 by peptide microarrays

  HARNOŠ Jakub RYNEŠ Jan VÍŠKOVÁ Pavlína TRANTÍRKOVÁ Silvie BAJARD ÉP.ESNER Lola Murielle TRANTÍREK Lukáš BRYJA Vítězslav

  Article in Periodical

  Journal of Biological Chemistry, year: 2018, volume: 293, edition: 42, DOI

2017

• G-quadruplex formation in the Oct4 promoter positively regulates Oct4 expression

  RENCIUK D. RYNEŠ Jan KEJNOVSKA I. TRANTÍRKOVÁ Silvie ANDÄNG Michael TRANTÍREK Lukáš VORLICKOVA M.

  Article in Periodical

  BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, year: 2017, volume: 1860, edition: 2, DOI

• Structure-activity relationships in polymorphic G-quadruplex forming segment of c-MYC promoter

  RYNEŠ Jan FESSL T. KRAFČÍKOVÁ Michaela TRANTÍREK Lukáš TRANTÍRKOVÁ Silvie

  Conference abstract

  Year: 2017, type: Conference abstract