prof. Mgr. Jiří Damborský, Dr.

2019

• Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI

• Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

  ŠTOURAČ Jan VAVRA O. KOKKONEN Piia Pauliina FILIPOVIČ Jiří FONSECA PINTO Gabriela Filipa SCHENKMAYEROVÁ Andrea DAMBORSKÝ Jiří BEDNÁŘ David

  Conference abstract

  Year: 2019, type: Conference abstract

• CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels

  VÁVRA Ondřej FILIPOVIČ Jiří PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan ŠTOURAČ Jan MATYSKA Luděk DAMBORSKÝ Jiří

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 23, DOI

• Collagen-based dermal substitute with stable fibroblast growth factor 2 (FGF2): ex ovo and in vivo impact on neovascularization

  LIPOVÝ Břetislav VOJTOVÁ Lucy HOLOUBEK Jakub ZÍDEK Jana KNOZ Martin BABRNAKOVA Johana PAVLIŇÁKOVÁ Veronika VIŠTĚJNOVÁ Lucie ŠTĚPÁNKOVÁ Veronika FILOVÁ Eva PAVLOVSKÝ Zdeněk FALDYNA Martin GÖPFERT Eduard DAMBORSKÝ Jiří HEARNDEN Vanessa

  Conference abstract

  Year: 2019, type: Conference abstract

• Computational Design of Stable and Soluble Biocatalysts

  MUSIL Miloš KONEGGER Hannes HON Jiří BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  ACS Catalysis, year: 2019, volume: 9, edition: 2, DOI

• Computational Modelling of Metabolic Burden and Substrate Toxicity in Escherichia coli Carrying a Synthetic Metabolic Pathway

  DEMKO Martin CHRÁST Lukáš DVOŘÁK Pavel DAMBORSKÝ Jiří ŠAFRÁNEK David

  Article in Periodical

  Microorganisms, year: 2019, volume: 7, edition: 11, DOI

• Computational Study of Protein-Ligand Unbinding for Enzyme Engineering

  MARQUES Sérgio Manuel BEDNÁŘ David DAMBORSKÝ Jiří

  Article in Periodical

  FRONTIERS IN CHEMISTRY, year: 2019, volume: 6, edition: JAN 2019, DOI

• Controlled Oil/Water Partitioning of Hydrophobic Substrates Extending the Bioanalytical Applications of Droplet-Based Microfluidics

  BURYŠKA Tomáš VAŠINA Michal GIELEN Fabrice VAŇÁČEK Pavel VAN VLIET Liisa JEZEK Jan PILAT Zdenek ZEMÁNEK Pavel DAMBORSKÝ Jiří HOLLFELDER Florian PROKOP Zbyněk

  Article in Periodical

  Analytical Chemistry, year: 2019, volume: 91, edition: 15, DOI

• Crystal structure of the cold-adapted haloalkane dehalogenase DpcA from Psychrobacter cryohalolentis K5

  TRATSIAK K. PRUDNIKOVA Tanyana DRIENOVSKÁ Ivana DAMBORSKÝ Jiří BRYNDA Jiří PACHL Petr KUTÝ Michal CHALOUPKOVÁ Radka REZACOVA P. SMATANOVA I.K.

  Article in Periodical

  ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, year: 2019, volume: 75, edition: MAY 2019, DOI

• Crystallization and Crystallographic Analysis of a Bradyrhizobium Elkanii USDA94 Haloalkane Dehalogenase Variant with an Eliminated Halide-Binding Site

  PRUDNIKOVA T. KASCAKOVA B. MESTERS J.R. GRINKEVICH P. HAVLICKOVA P. MAZUR A. SHAPOSHNIKOVA A. CHALOUPKOVÁ Radka DAMBORSKÝ Jiří KUTY M. SMATANOVA I.K.

  Article in Periodical

  CRYSTALS, year: 2019, volume: 9, edition: 7, DOI