doc. RNDr. David Svoboda, Ph.D.

2019

• CytoPacq: A web-interface for simulating multi-dimensional cell imaging

  WIESNER David SVOBODA David MAŠKA Martin KOZUBEK Michal

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 21, DOI

• On Generative Modeling of Cell Shape Using 3D GANs

  WIESNER David NEČASOVÁ Tereza SVOBODA David

  Article in Proceedings

  Image Analysis and Processing – ICIAP 2019, year: 2019

• The role of RNA Polymerase II contiguity and long-range interactions in the regulation of gene expression in human pluripotent stem cells.

  EISELLEOVÁ Lívia LUKJANOV Viktor FARKAŠ Šimon SVOBODA David ŠTĚPKA Karel KOUTNÁ Irena

  Article in Periodical

  Stem Cells International, year: 2019, volume: 2019, edition: Article ID 1375807, DOI

• Toward Robust Fully 3D Filopodium Segmentation and Tracking in Time-Lapse Fluorescence Microscopy

  MAŠKA Martin NEČASOVÁ Tereza WIESNER David SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David

  Article in Proceedings

  26th IEEE International Conference on Image Processing, year: 2019

• Visual and Quantitative Comparison of Real and Simulated Biomedical Image Data

  NEČASOVÁ Tereza SVOBODA David

  Article in Proceedings

  Computer Vision – ECCV 2018 Workshops, year: 2019

2018

• ADC mapy ve vztahu k peritumorózní buněčné infiltraci u glioblastomu

  SOLÁR Peter MACKERLE Zdeněk VALEKOVÁ Hana HERMANOVÁ Markéta HENDRYCH Michal JANČÁLEK Radim SVOBODA David

  Conference abstract

  Year: 2018, type: Conference abstract

• FiloGen: A Model-Based Generator of Synthetic 3-D Time-Lapse Sequences of Single Motile Cells with Growing and Branching Filopodia

  SOROKIN Dmitry PETERLÍK Igor ULMAN Vladimír SVOBODA David NEČASOVÁ Tereza MORGAENKO Katsiarina EISELLEOVÁ Lívia TESAŘOVÁ Lenka MAŠKA Martin

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2018, volume: 37, edition: 12, DOI

• Model-Based Generation of Synthetic 3D Time-Lapse Sequences of Multiple Mutually Interacting Motile Cells with Filopodia

  PETERLÍK Igor SVOBODA David ULMAN Vladimír SOROKIN Dmitry MAŠKA Martin

  Article in Proceedings

  Simulation and Synthesis in Medical Imaging, year: 2018

• Tubular Network Formation Process Using 3D Cellular Potts Model

  SVOBODA David NEČASOVÁ Tereza TESAŘOVÁ Lenka ŠIMARA Pavel

  Article in Proceedings

  Simulation and Synthesis in Medical Imaging, year: 2018

2017

• An objective comparison of cell-tracking algorithms

  ULMAN Vladimír MAŠKA Martin MAGNUSSON Klas E G RONNEBERGER Olaf HAUBOLD Carsten HARDER Nathalie MATULA Pavel MATULA Petr SVOBODA David RADOJEVIC Miroslav SMAL Ihor ROHR Karl JALDÉN Joakim BLAU Helen M DZYUBACHYK Oleh LELIEVELDT Boudewijn XIAO Pengdong LI Yuexiang CHO Siu-Yeung DUFOUR Alexandre C OLIVO-MARIN Jean-Christophe REYES-ALDASORO Constantino C SOLIS-LEMUS Jose A BENSCH Robert BROX Thomas STEGMAIER Johannes MIKUT Ralf WOLF Steffen HAMPRECHT Fred A ESTEVES Tiago QUELHAS Pedro DEMIREL Ömer MALMSTRÖM Lars JUG Florian TOMANCAK Pavel MEIJERING Erik MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI