prof. RNDr. Jiří Šponer, DrSc.

2007

• Molecular dynamics simulations of RNA: An in silico single molecule approach

  MCDOWELL Elizabeth ŠPAČKOVÁ Naďa ŠPONER Jiří WALTER Nils

  Article in Periodical

  BIOPOLYMERS, year: 2007, volume: 85, edition: 2

• Refinement of the AMBER force field for nucleic acids: Improving the description of alfa/gamma conformers

  PEREZ Alberto MARCHAN Ivan SVOZIL Daniel ŠPONER Jiří CHEATHAM Thomas LAUGHTON Charles

  Article in Periodical

  Biophysical Journal, year: 2007, volume: 92, edition: 11

• Ribosomal RNA motifs and segments have salient flexibilities

  ŠPONER Jiří MOKDAD Ali RÁZGA Filip RÉBLOVÁ Kamila ŠPAČKOVÁ Naděžda

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

• Spectroscopic and Theoretical Insights into Sequence Effects of Aminofluorene-Induced Conformational Heterogeneity and Nucleotide Excision Repair

  MENENI Srinivasa SHELL Steven GAO Lan JURECKA Petr LEE Wang SPONER Jiri ZOU Yue CHIARELLI Paul CHO Bongsup

  Article in Periodical

  Biochemistry, year: 2007, volume: 46/2007, edition: 40

• Study of structure, dynamics and local elasticity of 16S rRNA Helix 44 using molecular dynamics methods.

  RÉBLOVÁ Kamila LANKAS Filip SPONER Jiri

  Article in Proceedings

  Journal Of Biomolecular Structure and Dynamics, year: 2007

• Theoretical study on structure, stability, and electronic properties of the guanine-Zn-cytosine base pair in M-DNA

  FUENTES-CABRERA Miguel SUMPTER Bobby SPONER Judit SPONER Jiri PETIT Leon WELLS Jack

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY B, year: 2007, volume: 111, edition: 4

2006

• Cations and Hydration in Catalytic RNA: Molecular Dynamics of the Hepatitis Delta Virus Ribozyme

  KRASOVSKA Maryna SEVCIKOVA Jana REBLOVA Kamila SCHNEIDER Bohdan NILS Walter SPONER Jiri

  Article in Periodical

  Biophysical Journal, year: 2006, volume: 91, edition: -

• Challenges and advances in computational chemistry and physics. Computational studies of RNA and DNA

  ŠPONER Jiří LANKAŠ Filip

  Monograph

  Year: 2006, number of pages: 635 s.

• Mechanism of action of anticancer titanocene derivatives: an insight from quantum chemical calculations

  SPONER Judit E LESZCZYNSKI Jerzy ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2006, volume: 110/2006, edition: 39

• Molecular dynamics simulations of nucleic acids: MD simulations of G-DNA and functional RNAs

  ŠPAČKOVÁ Naděžda CHEATHAM Thomas E ŠPONER Jiří

  Chapter of a book

  Challenges and advances in computational chemistry and physics. Computational studies of RNA and DNA, year: 2006, number of pages: 26 s.