doc. RNDr. Pavel Matula, Ph.D.

2019

• Deep-Learning-Based Segmentation of Small Extracellular Vesicles in Transmission Electron Microscopy Images

  GÓMEZ-DE-MARISCAL Estibaliz MAŠKA Martin KOTRBOVÁ Anna POSPÍCHALOVÁ Vendula MATULA Pavel MUNOZ-BARRUTIA Arrate

  Article in Periodical

  Scientific Reports, year: 2019, volume: 9, edition: 13211, DOI

• TEM ExosomeAnalyzer: a computer-assisted software tool for quantitative evaluation of extracellular vesicles in transmission electron microscopy images

  KOTRBOVÁ Anna ŠTĚPKA Karel MAŠKA Martin PÁLENIK Juraj ILKOVICS Ladislav KLEMOVÁ Dobromila KRAVEC Marek HUBATKA František DAVE Zankruti HAMPL Aleš BRYJA Vítězslav MATULA Pavel POSPÍCHALOVÁ Vendula

  Article in Periodical

  Journal of Extracellular Vesicles, year: 2019, volume: 8, edition: 1, DOI

• The Effect of Uncoated SPIONs on hiPSC-Differentiated Endothelial Cells

  ŠALINGOVÁ Barbara ŠIMARA Pavel MATULA Pavel ZAJÍČKOVÁ Lenka SYNEK Petr JAŠEK Ondřej VEVERKOVÁ Lenka SEDLÁČKOVÁ Miroslava NICHTOVA Zuzana KOUTNÁ Irena

  Article in Periodical

  International Journal of Molecular Sciences, year: 2019, volume: 20, edition: 14, DOI

2018

• Non-rigid Contour-Based Registration of Cell Nuclei in 2-D Live Cell Microscopy Images Using a Dynamic Elasticity Model

  SOROKIN Dmitry PETERLÍK Igor TEKTONIDIS Marco ROHR Karl MATULA Pavel

  Article in Periodical

  IEEE Transactions on Medical Imaging, year: 2018, volume: 37, edition: 1, DOI

• Reprogramming of Adult Peripheral Blood Cells into Human Induced Pluripotent Stem Cells as a Safe and Accessible Source of Endothelial Cells.

  ŠIMARA Pavel TESAŘOVÁ Lenka ŘEHÁKOVÁ Daniela FARKAŠ Šimon ŠALINGOVÁ Barbara KUTÁLKOVÁ Kateřina VAVREČKOVÁ Eva MATULA Pavel MATULA Petr VEVERKOVÁ Lenka KRONTORÁD KOUTNÁ Irena

  Article in Periodical

  Stem Cells and Development, year: 2018, volume: 27, edition: 1, DOI

• Reprogramming of peripheral blood cells into hiPSCs as a source of endothelial cells

  ŠIMARA Pavel TESAŘOVÁ Lenka ŘEHÁKOVÁ Daniela FARKAŠ Šimon ŠALINGOVÁ Barbara KUTÁLKOVÁ Kateřina VAVREČKOVÁ Eva MATULA Pavel MATULA Petr KRONTORÁD KOUTNÁ Irena

  Conference abstract

  Year: 2018, type: Conference abstract

2017

• An objective comparison of cell-tracking algorithms

  ULMAN Vladimír MAŠKA Martin MAGNUSSON Klas E G RONNEBERGER Olaf HAUBOLD Carsten HARDER Nathalie MATULA Pavel MATULA Petr SVOBODA David RADOJEVIC Miroslav SMAL Ihor ROHR Karl JALDÉN Joakim BLAU Helen M DZYUBACHYK Oleh LELIEVELDT Boudewijn XIAO Pengdong LI Yuexiang CHO Siu-Yeung DUFOUR Alexandre C OLIVO-MARIN Jean-Christophe REYES-ALDASORO Constantino C SOLIS-LEMUS Jose A BENSCH Robert BROX Thomas STEGMAIER Johannes MIKUT Ralf WOLF Steffen HAMPRECHT Fred A ESTEVES Tiago QUELHAS Pedro DEMIREL Ömer MALMSTRÖM Lars JUG Florian TOMANCAK Pavel MEIJERING Erik MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLORZANO Carlos

  Article in Periodical

  Nature Methods, year: 2017, volume: 14, edition: 12, DOI

• DNA double-strand breaks in human induced pluripotent stem cell reprogramming and long-term in vitro culturing

  ŠIMARA Pavel TESAŘOVÁ Lenka ŘEHÁKOVÁ Daniela MATULA Pavel STEJSKAL Stanislav HAMPL Aleš KRONTORÁD KOUTNÁ Irena

  Article in Periodical

  Stem Cell Research & Therapy, year: 2017, volume: 8, edition: 73, DOI

• Particle Tracking Accuracy Measurement Based on Comparison of Linear Oriented Forests

  MAŠKA Martin MATULA Pavel

  Article in Proceedings

  16th IEEE International Conference on Computer Vision Workshops, year: 2017

2016

• Automatic Detection and Segmentation of Exosomes in Transmission Electron Microscopy

  ŠTĚPKA Karel MAŠKA Martin PÁLENIK Jakub Jozef POSPÍCHALOVÁ Vendula KOTRBOVÁ Anna ILKOVICS Ladislav KLEMOVÁ Dobromila HAMPL Aleš BRYJA Vítězslav MATULA Pavel

  Article in Proceedings

  Computer Vision -- ECCV 2016 Workshops: Amsterdam, The Netherlands, October 8-10 and 15-16, 2016, Proceedings, Part I, year: 2016