prof. RNDr. Michal Kozubek, Ph.D.

2024

• Brain MRI Screening Tool with Federated Learning

  STOKLASA Roman STATHOPOULOS Ioannis KARAVASILIS Efstratios EFSTATHOPOULOS Efstathios DOSTÁL Marek KEŘKOVSKÝ Miloš KOZUBEK Michal SERIO Luigi

  Article in Proceedings

  2024 IEEE International Symposium on Biomedical Imaging, year: 2024

• Gravitational Cell Detection and Tracking in Fluorescence Microscopy Data

  EFTIMIU Nikomidisz Jorgosz KOZUBEK Michal

  Article in Proceedings

  24 IEEE International Symposium on Biomedical Imaging (ISBI), year: 2024

• Metrics reloaded: recommendations for image analysis validation

  MAIER-HEIN Lena REINKE Annika GODAU Patrick TIZABI Minu D BUETTNER Florian CHRISTODOULOU Evangelia GLOCKER Ben ISENSEE Fabian KLEESIEK Jens KOZUBEK Michal REYES Mauricio RIEGLER Michael A WIESENFARTH Manuel KAVUR A Emre SUDRE Carole H BAUMGARTNER Michael EISENMANN Matthias HECKMANN-NOETZEL Doreen RAEDSCH Tim ACION Laura ANTONELLI Michela ARBEL Tal BAKAS Spyridon BENIS Arriel BLASCHKO Matthew B CARDOSO M Jorge CHEPLYGINA Veronika CIMINI Beth A COLLINS Gary S FARAHANI Keyvan FERRER Luciana GALDRAN Adrian BRAM van Ginneken HAASE Robert HASHIMOTO Daniel A HOFFMAN Michael M HUISMAN Merel JANNIN Pierre KAHN Charles E KAINMUELLER Dagmar KAINZ Bernhard KARARGYRIS Alexandros KARTHIKESALINGAM Alan KOFLER Florian KOPP-SCHNEIDER Annette KRESHUK Anna KURC Tahsin LANDMAN Bennett A LITJENS Geert MADANI Amin MAIER-HEIN Klaus MARTEL Anne L MATTSON Peter MEIJERING Erik MENZE Bjoern MOONS Karel G M MUELLER Henning NICHYPORUK Brennan NICKEL Felix PETERSEN Jens RAJPOOT Nasir RIEKE Nicola SAEZ-RODRIGUEZ Julio SANCHEZ Clara I SHETTY Shravya MAARTEN van Smeden SUMMERS Ronald M TAHA Abdel A TIULPIN Aleksei TSAFTARIS Sotirios A BEN Van Calster VAROQUAUX Gael JAEGER Paul F

  Article in Periodical

  NATURE METHODS, year: 2024, volume: 21, edition: February, DOI

• Possibilities of Using Multi-b-value Diffusion Magnetic Resonance Imaging for Classification of Brain Lesions

  KOPŘIVOVÁ Tereza KEŘKOVSKÝ Miloš JŮZA Tomáš VYBÍHAL Václav ROHAN Tomáš KOZUBEK Michal DOSTÁL Marek

  Article in Periodical

  Academic Radiology, year: 2024, volume: 31, edition: 1, DOI

• Understanding metric-related pitfalls in image analysis validation

  REINKE Annika TIZABI Minu D BAUMGARTNER Michael EISENMANN Matthias HECKMANN-NÖTZEL Doreen KAVUR A Emre RÄDSCH Tim SUDRE Carole H ACION Laura ANTONELLI Michela ARBEL Tal BAKAS Spyridon BENIS Arriel BUETTNER Florian CARDOSO M Jorge CHEPLYGINA Veronika CHEN Jianxu CHRISTODOULOU Evangelia CIMINI Beth A FARAHANI Keyvan FERRER Luciana GALDRAN Adrian GINNEKEN Bram van GLOCKER Ben GODAU Patrick HASHIMOTO Daniel A HOFFMAN Michael M HUISMAN Merel ISENSEE Fabian JANNIN Pierre KAHN Charles E KAINMUELLER Dagmar KAINZ Bernhard KARARGYRIS Alexandros KLEESIEK Jens KOFLER Florian KOOI Thijs KOPP-SCHNEIDER Annette KOZUBEK Michal KRESHUK Anna KURC Tahsin LANDMAN Bennett A LITJENS Geert MADANI Amin MAIER-HEIN Klaus MARTEL Anne L MEIJERING Erik MENZE Bjoern MOONS Karel GM MÜLLER Henning NICHYPORUK Brennan NICKEL Felix PETERSEN Jens RAFELSKI Susanne M RAJPOOT Nasir REYES Mauricio RIEGLER Michael A RIEKE Nicola SAEZ-RODRIGUEZ Julio SÁNCHEZ Clara I SHETTY Shravya SUMMERS Ronald M TAHA Abdel A TIULPIN Aleksei TSAFTARIS Sotirios A CALSTER Ben Van VAROQUAUX Gaël YANIV Ziv R JÄGER Paul F MAIER-HEIN Lena

  Article in Periodical

  NATURE METHODS, year: 2024, volume: 21, edition: February, DOI

2023

• The Cell Tracking Challenge: 10 years of objective benchmarking

  MAŠKA Martin ULMAN Vladimír DELGADO-RODRIGUEZ Pablo GÓMEZ-DE-MARISCAL Estibaliz NEČASOVÁ Tereza PENA Fidel A Guerrero REN Tsang Ing MEYEROWITZ Elliot M SCHERR Tim LÖFFLER Katharina MIKUT Ralf GUO Tianqi WANG Yin ALLEBACH Jan P BAO Rina AL-SHAKARJI Noor M RAHMON Gani TOUBAL Imad Eddine PALANIAPPAN Kannappan LUX Filip MATULA Petr SUGAWARA Ko MAGNUSSON Klas E G AHO Layton COHEN Andrew R ARBELLE Assaf BEN-HAIM Tal RAVIV Tammy Riklin ISENSEE Fabian JÄGER Paul F MAIER-HEIN Klaus H ZHU Yanming EDERRA Cristina URBIOLA Ainhoa MEIJERING Erik CUNHA Alexandre MUNOZ-BARRUTIA Arrate KOZUBEK Michal ORTIZ-DE-SOLÓRZANO Carlos

  Article in Periodical

  Nature Methods, year: 2023, volume: 20, edition: 7, DOI

• Why is the winner the best?

  EISENMANN M. REINKE A. WERU V. TIZABI M. D. ISENSEE F. ADLER T. J. ALI S. ANDREARCZYK V. AUBREVILLE M. BAID U. BAKAS S. BALU N. BANO S. BERNAL J. BODENSTEDT S. CASELLA A. CHEPLYGINA V. DAUM M. DE BRUIJNE M. DEPEURSINGE A. DORENT R. EGGER J. ELLIS D. G. ENGELHARDT S. GANZ M. GHATWARY N. GIRARD G. GODAU P. GUPTA A. HANSEN L. HARADA K. HEINRICH M. HELLER N. HERING A. HUAULME A. JANNIN P. KAVUR A. E. KODYM O. KOZUBEK Michal LI J. LI H. MA J. MARTIN-ISLA C. MENZE B. NOBLE A. OREILLER V. PADOY N. PATI S. PAYETTE K. RAEDSCH T. RAFAEL-PATINO J. BAWA V. Singh SPEIDEL S. SUDRE C. H. VAN WIJNEN K. WAGNER M. WEI D. YAMLAHI A. YAP M. H. YUAN C. ZENK M. ZIA A. ZIMMERER D. AYDOGAN D. BHATTARAI B. BLOCH L. BRUENGEL R. CHO J. CHOI C. DOU Q. EZHOV I. FRIEDRICH C. M. FULLER C. GAIRE R. R. GALDRAN A. FAURA A. Garcia GRAMMATIKOPOULOU M. HONG S. JAHANIFAR M. JANG I. KADKHODAMOHAMMADI A. KANG I. KOFLER F. KONDO S. KUIJF H. LI M. LUU M. MARTINCIC T. MORAIS P. NASER M. A. OLIVEIRA B. OWEN D. PANG S. PARK J. PARK S. PLOTKA S. PUYBAREAU E. RAJPOOT N. RYU K. SAEED N. SHEPHARD A. SHI P. STEPEC D. SUBEDI R. TOCHON G. TORRES H. R. URIEN H. VILACA J. L. WAHID K. A. WANG H. WANG J. WANG L. WANG X. WIESTLER B. WODZINSKI M. XIA F. XIE J. XIONG Z. YANG S. YANG Y. ZHAO Z. MAIER-HEIN K. JAEGER P. F. KOPP-SCHNEIDER A. MAIER-HEIN L.

  Article in Proceedings

  2023 IEEE/CVF CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR), year: 2023

2022

• Differentiation of high grade glioma and brain metastasis using intravoxel incoherent motion MRI

  KEŘKOVSKÝ Miloš DOSTÁL Marek KOPŘIVOVÁ Tereza JŮZA Tomáš VYBÍHAL Václav NEUMAN Eduard MATULA Petr KOZUBEK Michal

  Appeared in Conference without Proceedings

  Year: 2022, type: Appeared in Conference without Proceedings

• Federated learning enables big data for rare cancer boundary detection

  PATI Sarthak BAID Ujjwal EDWARDS Brandon SHELLER Micah WANG Shih-Han REINA G Anthony FOLEY Patrick GRUZDEV Alexey KARKADA Deepthi DAVATZIKOS Christos SAKO Chiharu GHODASARA Satyam BILELLO Michel MOHAN Suyash VOLLMUTH Philipp BRUGNARA Gianluca PREETHA Chandrakanth J SAHM Felix MAIER-HEIN Klaus ZENK Maximilian BENDSZUS Martin WICK Wolfgang CALABRESE Evan RUDIE Jeffrey VILLANUEVA-MEYER Javier CHA Soonmee INGALHALIKAR Madhura JADHAV Manali PANDEY Umang SAINI Jitender GARRETT John LARSON Matthew JERAJ Robert CURRIE Stuart FROOD Russell FATANIA Kavi HUANG Raymond Y CHANG Ken QUINTERO Carmen Balana CAPELLADES Jaume PUIG Josep TRENKLER Johannes PICHLER Josef NECKER Georg HAUNSCHMIDT Andreas MECKEL Stephan SHUKLA Gaurav LIEM Spencer ALEXANDER Gregory S LOMBARDO Joseph PALMER Joshua D FLANDERS Adam E DICKER Adam P SAIR Haris I JONES Craig K VENKATARAMAN Archana JIANG Meirui SO Tiffany Y CHEN Cheng HENG Pheng Ann DOU Qi KOZUBEK Michal LUX Filip MICHÁLEK Jan MATULA Petr KEŘKOVSKÝ Miloš KOPŘIVOVÁ Tereza DOSTÁL Marek VYBÍHAL Václav VOGELBAUM Michael A MITCHELL J Ross FARINHAS Joaquim MALDJIAN Joseph A YOGANANDA Chandan Ganesh Bangalore PINHO Marco C REDDY Divya HOLCOMB James WAGNER Benjamin C ELLINGSON Benjamin M CLOUGHESY Timothy F RAYMOND Catalina OUGHOURLIAN Talia HAGIWARA Akifumi WANG Chencai TO Minh-Son BHARDWAJ Sargam CHONG Chee AGZARIAN Marc FALCAO Alexandre Xavier MARTINS Samuel B TEIXEIRA Bernardo C A SPRENGER Flávia MENOTTI David LUCIO Diego R LAMONTAGNE Pamela MARCUS Daniel WIESTLER Benedikt KOFLER Florian EZHOV Ivan METZ Marie JAIN Rajan LEE Matthew LUI Yvonne W MCKINLEY Richard SLOTBOOM Johannes RADOJEWSKI Piotr MEIER Raphael WIEST Roland MURCIA Derrick FU Eric HAAS Rourke THOMPSON John ORMOND David Ryan BADVE Chaitra SLOAN Andrew E VADMAL Vachan WAITE Kristin COLEN Rivka R PEI Linmin AK Murat SRINIVASAN Ashok BAPURAJ J Rajiv RAO Arvind WANG Nicholas YOSHIAKI Ota MORITANI Toshio TURK Sevcan LEE Joonsang PRABHUDESAI Snehal MORÓN Fanny MANDEL Jacob KAMNITSAS Konstantinos GLOCKER Ben DIXON Luke V M WILLIAMS Matthew ZAMPAKIS Peter PANAGIOTOPOULOS Vasileios TSIGANOS Panagiotis ALEXIOU Sotiris HALIASSOS Ilias ZACHARAKI Evangelia I MOUSTAKAS Konstantinos KALOGEROPOULOU Christina KARDAMAKIS Dimitrios M CHOI Yoon Seong LEE Seung-Koo CHANG Jong Hee AHN Sung Soo LUO Bing POISSON Laila WEN Ning TIWARI Pallavi VERMA Ruchika BAREJA Rohan YADAV Ipsa CHEN Jonathan KUMAR Neeraj SMITS Marion VAN DER VOORT Sebastian R ALAFANDI Ahmed INCEKARA Fatih WIJNENGA Maarten M J KAPSAS Georgios GAHRMANN Renske SCHOUTEN Joost W DUBBINK Hendrikus J VINCENT Arnaud J P E VAN DEN BENT Martin J FRENCH Pim J KLEIN Stefan YUAN Yading SHARMA Sonam TSENG Tzu-Chi ADABI Saba NICLOU Simone P KEUNEN Olivier HAU Ann-Christin VALLIERES Martin FORTIN David LEPAGE Martin LANDMAN Bennett RAMADASS Karthik XU Kaiwen CHOTAI Silky CHAMBLESS Lola B MISTRY Akshitkumar THOMPSON Reid C GUSEV Yuriy BHUVANESHWAR Krithika SAYAH Anousheh BENCHEQROUN Camelia BELOUALI Anas MADHAVAN Subha BOOTH Thomas C CHELLIAH Alysha MODAT Marc SHUAIB Haris DRAGOS Carmen ABAYAZEED Aly KOLODZIEJ Kenneth HILL Michael ABBASSY Ahmed GAMAL Shady MEKHAIMAR Mahmoud QAYATI Mohamed REYES Mauricio PARK Ji Eun YUN Jihye KIM Ho Sung MAHAJAN Abhishek MUZI Mark BENSON Sean BEETS-TAN Regina G H TEUWEN Jonas HERRERA-TRUJILLO Alejandro TRUJILLO Maria ESCOBAR William ABELLO Ana BERNAL Jose GÓMEZ Jhon CHOI Joseph BAEK Stephen KIM Yusung ISMAEL Heba ALLEN Bryan BUATTI John M KOTROTSOU Aikaterini LI Hongwei WEISS Tobias WELLER Michael BINK Andrea POUYMAYOU Bertrand SHAYKH Hassan F SALTZ Joel PRASANNA Prateek SHRESTHA Sampurna MANI Kartik M PAYNE David KURC Tahsin PELAEZ Enrique FRANCO-MALDONADO Heydy LOAYZA Francis QUEVEDO Sebastian GUEVARA Pamela TORCHE Esteban MENDOZA Cristobal FRANCO Vera RÍOS Elvis LÓPEZ Eduardo VELASTIN Sergio A OGBOLE Godwin SONEYE Mayowa OYEKUNLE Dotun ODAFE-OYIBOTHA Olubunmi OSOBU Babatunde SHU'AIBU Mustapha DORCAS Adeleye DAKO Farouk SIMPSON Amber L HAMGHALAM Mohammad PEOPLES Jacob J HU Ricky TRAN Anh CUTLER Danielle MORAES Fabio Y BOSS Michael A GIMPEL James VEETTIL Deepak Kattil SCHMIDT Kendall BIALECKI Brian MARELLA Sailaja PRICE Cynthia CIMINO Lisa APGAR Charles SHAH Prashant MENZE Bjoern BARNHOLTZ-SLOAN Jill S MARTIN Jason BAKAS Spyridon

  Article in Periodical

  Nature Communications, year: 2022, volume: 13, edition: 7346, DOI

2021

• Multimodal Imaging of 3D Cell Aggregates

  PREISLER Jan MACHÁLKOVÁ Markéta ADAMOVÁ Barbora NAVRÁTILOVÁ Jarmila STIBOREK Marek MELIORISOVÁ Stanislava KROUPA Jiří HOUŠKA Pavel MICHÁLEK Jan ŠTĚPKA Karel RADASZKIEWICZ Katarzyna Anna PRUŠKA Adam KANICKÝ Viktor KOZUBEK Michal ŠMARDA Jan

  Year: 2021, type: