prof. RNDr. Michal Kozubek, Ph.D.

2020

• BIAS: Transparent reporting of biomedical image analysis challenges

  MAIER-HEIN Lena REINKE Annika KOZUBEK Michal MARTEL Anne L. ARBEL Tal EISENMANN Matthias HANBURY Allan JANNIN Pierre MÜLLER Henning ONOGUR Sinan SAEZ-RODRIGUEZ Julio VAN GINNEKEN Bram KOPP-SCHNEIDER Annette LANDMAN Bennett A.

  Article in Periodical

  Medical Image Analysis, year: 2020, volume: 66, edition: 101796, DOI

• Condensed U-Net (CU-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers

  AKBAS Cem Emre KOZUBEK Michal

  Article in Proceedings

  IEEE 17th International Symposium on Biomedical Imaging, year: 2020

• Lactic Acidosis Interferes With Toxicity of Perifosine to Colorectal Cancer Spheroids: Multimodal Imaging Analysis

  PAVLATOVSKÁ Barbora MACHÁLKOVÁ Markéta BRISUDOVÁ Petra PRUŠKA Adam ŠTĚPKA Karel MICHÁLEK Jan NEČASOVÁ Tereza BENEŠ Petr ŠMARDA Jan PREISLER Jan KOZUBEK Michal NAVRÁTILOVÁ Jarmila

  Article in Periodical

  Frontiers in Oncology, year: 2020, volume: 10, edition: December, DOI

• When Deep Learning Meets Cell Image Synthesis

  KOZUBEK Michal

  Article in Periodical (without peer review)

  Year: 2020, type: Article in Periodical (without peer review)

2019

• Automatic Fusion of Segmentation and Tracking Labels

  AKBAŞ Cem Emre ULMAN Vladimír MAŠKA Martin JUG Florian KOZUBEK Michal

  Article in Proceedings

  Computer Vision – ECCV 2018 Workshops, year: 2019

• Combined therapy of perifosine and ABT-737 results in higher cytotoxic effect but also induces expression of EMT markers in colon cancer cell lines

  PAVLATOVSKÁ Barbora NAVRÁTILOVÁ Jarmila MACHÁLKOVÁ Markéta MICHÁLEK Jan ŠTĚPKA Karel PRUŠKA Adam KOZUBEK Michal BENEŠ Petr ŠMARDA Jan PREISLER Jan

  Conference abstract

  Year: 2019, type: Conference abstract

• CytoPacq: A web-interface for simulating multi-dimensional cell imaging

  WIESNER David SVOBODA David MAŠKA Martin KOZUBEK Michal

  Article in Periodical

  Bioinformatics, year: 2019, volume: 35, edition: 21, DOI

• Drug Penetration Analysis in 3D Cell Cultures Using Fiducial-Based Semiautomatic Coregistration of MALDI MSI and Immunofluorescence Images

  MACHÁLKOVÁ Markéta PAVLATOVSKÁ Barbora MICHÁLEK Jan PRUŠKA Adam ŠTĚPKA Karel NEČASOVÁ Tereza RADASZKIEWICZ Katarzyna Anna KOZUBEK Michal ŠMARDA Jan PREISLER Jan NAVRÁTILOVÁ Jarmila

  Article in Periodical

  Analytical Chemistry, year: 2019, volume: 91, edition: 21, DOI

• Fiducial-based semi-automatic coregistration and analysis of multimodal MALDI MS and immunofluorescent data

  NAVRÁTILOVÁ Jarmila MACHÁLKOVÁ Markéta PAVLATOVSKÁ Barbora MICHÁLEK Jan PRUŠKA Adam ŠTĚPKA Karel RADASZKIEWICZ Katarzyna Anna PREISLER Jan ŠMARDA Jan KOZUBEK Michal

  Year: 2019, type:

• Quantitative Assessment of Anti-Cancer Drug Efficacy From Coregistered Mass Spectrometry and Fluorescence Microscopy Images of Multicellular Tumor Spheroids

  MICHÁLEK Jan ŠTĚPKA Karel KOZUBEK Michal NAVRÁTILOVÁ Jarmila PAVLATOVSKÁ Barbora MACHÁLKOVÁ Markéta PREISLER Jan PRUŠKA Adam

  Article in Periodical

  Microscopy and Microanalysis, year: 2019, volume: 25, edition: 6, DOI