doc. RNDr. Jiří Filipovič, Ph.D.

2022

• Improving ligand transport trajectory within flexible receptor in CaverDock

  NĚMCOVÁ Petra HOZZOVÁ Jana FILIPOVIČ Jiří

  Article in Proceedings

  SAC '22: Proceedings of the 37th ACM/SIGAPP Symposium on Applied Computing, year: 2022

• On bias, variance, overfitting, gold standard and consensus in single-particle analysis by cryo-electron microscopy

  SORZANO Carlos JIMÉNEZ-MORENO Amaya MALUENDA David MARTÍNEZ Marta RAMÍREZ-APORTELA Erney KRIEGER James MELERO Roberto CUERVO Ana CONESA Javier FILIPOVIČ Jiří CONESA Pablo CANO Laura del FONSECA Yunior LA MORENA Jorge Jiménez-de LOSANA Patricia SÁNCHEZ-GARCÍA Ruben STŘELÁK David FERNÁNDEZ-GIMÉNEZ Estrella DE ISIDRO-GÓMEZ Federico HERREROS David VILAS Jose Luis MARABINI Roberto CARAZO Jose Maria

  Article in Periodical

  Acta Crystallographica Section D: Structural Biology, year: 2022, volume: 78, edition: 4, DOI

• Using hardware performance counters to speed up autotuning convergence on GPUs

  FILIPOVIČ Jiří HOZZOVÁ Jana NEZARAT Amin OĽHA Jaroslav PETROVIČ Filip

  Article in Periodical

  Journal of Parallel and Distributed Computing, year: 2022, volume: 160, edition: February, DOI

2021

• 4D-GRAPHS

  BRÁZDIL Tomáš PORTEŠ David FILIPOVIČ Jiří HOZZOVÁ Jana EVANGELIDIS Thomas TRIPSIANES Konstantinos

  Software

  Year: 2021

• Advances in Xmipp for Cryo–Electron Microscopy: From Xmipp to Scipion

  STŘELÁK David JIMÉNEZ-MORENO Amaya VILAS José RAMÍREZ-APORTELA Erney SÁNCHEZ-GARCÍA Ruben MALUENDA David VARGAS Javier HERREROS David FERNÁNDEZ-GIMÉNEZ Estrella DE ISIDRO-GÓMEZ Federico HORÁČEK Jan MYŠKA David HORÁČEK Martin CONESA Pablo FONSECA-REYNA Yunior JIMÉNEZ Jorge MARTÍNEZ Marta HARASTANI Mohamad JONIĆ Slavica FILIPOVIČ Jiří MARABINI Roberto CARAZO José SORZANO Carlos

  Article in Periodical

  Molecules, year: 2021, volume: 26, edition: 20, DOI

• Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials

  HERREROS David LEDERMAN Roy R KRIEGER James JIMENEZ-MORENO Amaya MARTINEZ Marta MYŠKA David STŘELÁK David FILIPOVIČ Jiří BAHAR Ivet CARAZO Jose Maria SANCHEZ Carlos Oscar S

  Article in Periodical

  International Union of Crystallography Journals, year: 2021, volume: 8, edition: 6, DOI

• Computational enzyme design for metabolic engineering

  DAMBORSKÝ Jiří BEDNÁŘ David PROKOP Zbyněk MAREK Martin MAZURENKO Stanislav ŠTOURAČ Jan MARQUES Sérgio Manuel FONSECA PINTO Gabriela Filipa PLANAS IGLESIAS Joan MUSIL Miloš HON Jiří VÁVRA Ondřej KHAN Rayyan Tariq FILIPOVIČ Jiří KOZLÍKOVÁ Barbora

  Conference abstract

  Year: 2021, type: Conference abstract

• DeepAlign, a 3D Alignment Method based on Regionalized Deep Learning for Cryo-EM

  JIMÉNEZ-MORENO Amaya STŘELÁK David FILIPOVIČ Jiří CARAZO José María SORZANO Carlos Óscar S.

  Article in Periodical

  Journal of Structural Biology, year: 2021, volume: 213, edition: 2, DOI

• Image Processing in Cryo-Electron Microscopy of Single Particles: The Power of Combining Methods

  S. SORZANO Carlos Oscar JIMÉNEZ-MORENO Amaya MALUENDA David RAMÍREZ-APORTELA Erney MARTÍNEZ Marta CUERVO Ana MELERO Roberto CONESA Jose Javier SÁNCHEZ-GARCÍA Ruben STŘELÁK David FILIPOVIČ Jiří FERNÁNDEZ-GIMÉNEZ Estrella DE ISIDRO-GÓMEZ Federico HERREROS David CONESA Pablo DEL CANO Laura FONSECA Yunior JIMÉNEZ DE LA MORENA Jorge MACÍAS Jose Ramon LOSANA Patricia MARABINI Roberto CARAZO Jose-Maria

  Chapter of a book

  Structural Proteomics, year: 2021, number of pages: 33 s.

• Kernel Tuning Toolkit 2.0

  PETROVIČ Filip FILIPOVIČ Jiří STŘELÁK David HOZZOVÁ Jana TREMBECKÝ Richard

  Software

  Year: 2021