doc. RNDr. Jiří Filipovič, Ph.D.

Department head, Jiří Filipovič ´s Research Group

correspondence Address:
Šumavská 525/33, 602 00 Brno

office: A504
Botanická 554/68a
602 00 Brno

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phone:	+420 549 49 6374
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Basic information

Type

Total number of publications: 65

2021

Screening of world approved drugs against highly dynamical spike glycoprotein of SARS-CoV-2 using CaverDock and machine learning

RANGEL PAMPLONA PIZARRO PINTO José Gaspar VÁVRA Ondřej MARQUES Sérgio Manuel FILIPOVIČ Jiří BEDNÁŘ David DAMBORSKÝ Jiří

Article in Periodical

Computational and Structural Biotechnology Journal, year: 2021, volume: 19, edition: May, DOI
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures

HOZZOVÁ Jana FILIPOVIČ Jiří NEZARAT Amin OĽHA Jaroslav PETROVIČ Filip

Article in Periodical

Data in Brief, year: 2021, volume: 39, edition: December, DOI
Simulation of Ligand Transport in Receptors Using CaverDock

HOZZOVÁ Jana VÁVRA Ondřej BEDNÁŘ David FILIPOVIČ Jiří

Chapter of a book

Protein-Ligand Interactions and Drug Design, year: 2021, number of pages: 20 s.

2020

A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit

PETROVIČ Filip STŘELÁK David HOZZOVÁ Jana OĽHA Jaroslav TREMBECKÝ Richard BENKNER Siegfried FILIPOVIČ Jiří

Article in Periodical

Future Generation Computer Systems, year: 2020, volume: 108, edition: July, DOI
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport

FILIPOVIČ Jiří VÁVRA Ondřej PLHÁK Jan BEDNÁŘ David MARQUES Sérgio Manuel BREZOVSKÝ Jan MATYSKA Luděk DAMBORSKÝ Jiří

Article in Periodical

IEEE/ACM Transactions on Computational Biology and Bioinformatics, year: 2020, volume: 17, edition: 5, DOI
Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps

OĽHA Jaroslav HOZZOVÁ Jana FOUSEK Jan FILIPOVIČ Jiří

Article in Periodical

CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE, year: 2020, volume: 32, edition: 21, DOI
FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy

STŘELÁK David FILIPOVIČ Jiří JIMÉNEZ-MORENO Amaya CARAZO Jose María SÁNCHEZ SORZANO Carlos Óscar

Article in Periodical

Electronics, year: 2020, volume: 9, edition: 6, DOI

2019

A GPU acceleration of 3-D Fourier reconstruction in cryo-EM

STŘELÁK David SORZANO Carlos Óscar S. CARAZO José María FILIPOVIČ Jiří

Article in Periodical

The International Journal of High Performance Computing Applications, year: 2019, volume: 33, edition: 5, DOI
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport

ŠTOURAČ Jan VÁVRA Ondřej KOKKONEN Piia Pauliina FILIPOVIČ Jiří RANGEL PAMPLONA PIZARRO PINTO José Gaspar BREZOVSKÝ Jan DAMBORSKÝ Jiří BEDNÁŘ David

Article in Periodical

Nucleic acids research, year: 2019, volume: 47, edition: W1, DOI
Caver web: identification of tunnels and channels in proteins and analysis of ligand transport

ŠTOURAČ Jan VAVRA O. KOKKONEN Piia Pauliina FILIPOVIČ Jiří FONSECA PINTO Gabriela Filipa SCHENKMAYEROVÁ Andrea DAMBORSKÝ Jiří BEDNÁŘ David

Conference abstract

Year: 2019, type: Conference abstract