Project information
Proteins in metabolism and interaction of organisms with the environment
- Project Identification
- MSM0021622413
- Project Period
- 1/2005 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Research Intents
- MU Faculty or unit
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Faculty of Science
- prof. RNDr. Jaroslav Koča, DrSc.
- Other MU Faculty/Unit
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Central European Institute of Technology
- Keywords
- proteins, structure function relationships, protein complexes, proteome, metabolome
The proposal is the follow up of the previous, in our view successful, long-term research plan "Structure-Function Relationships of Biomolecules and their Role in Metabolism" studied in 1998-2004, and partly the project "Laboratory of Structure and Dynamics of Biomolecules" in the framework of program "250" studied in 1996-2000. The results of these projects were published in tens of scientific articles communicated in renowned international journals with high impact factors. The key aim was identification and characterization of low molecular weight substances involved in metabolism of bacteria and fungi with the special attention devoted to biochemical activities and the structure.
This new proposal will deal with other proteins from various organisms, for example animal proteins binding pheromones or proteins interacting with sacharides. The function and regulation of enzymes will be studied by novel methods suitable for monitoring of in vivo activity via monitoring of intracellular metabolites. We will continue to use structural methods. Keywords of the long-term research plan are protein, its function, structure, structure-function relationships and complexes of proteins. More general keywords are proteome and metabolome. The project will focus on such hot topics of current life sciences like protein/DNA interactions, synthesis of proteins on ribosome or applications of photo-labile groups for directed geometrical changes of protein-substrate complexes and regulation of enzymatic reactions.
Publications
Total number of publications: 835
2010
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Dextromethorphan metabolite profiles generated by in-capillary microreaction and subsequent electrophoretic separation
Book of Abtracts 16th Latin-American Symposium LACE 2010, year: 2010
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Dispersion-Driven Hydrogen Bonding: Predicted Hydrogen Bond between Water and Platinum(II) Identified by Neutron Diffraction
Angewandte Chemie International Edition, year: 2010, volume: 49, edition: 41
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"Double" lectin from Burkholderia cenocepacia - protein with dual binding specificity?
Year: 2010, type: Conference abstract
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Dynamic structure and binding specifity of the receiver domain of sensor histidine kinase CKI1
Year: 2010
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Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM.
Nucleic Acids Research, year: 2010, volume: 38, edition: 4
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Early Warning Biosensors for Detection of Chemical Warfare Agents.
CHEMICKE LISTY, year: 2010, volume: 104, edition: 104
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Effect of tetrahydroiso-alpha-acids on the growth of beer-spoiling and –nonspoiling bacteria
Kvasný Průmysl, year: 2010, edition: 10
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Employment of free energy calculations to estimation of carbohydrates affinities towards PA-IIL superfamily lectins
Year: 2010, type: Conference abstract
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Enantioselectivity of Haloalkane Dehalogenases and its Modulation by Surface Loop Engineering
Year: 2010, type:
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Engineering of Biocatalysts by Modification of Access Tunnels
Year: 2010, type: