Project information
Czech National Infrastructure for Biological Data
(ELIXIR-CZ)
- Project Identification
- LM2018131
- Project Period
- 1/2020 - 12/2022
- Investor / Pogramme / Project type
-
Ministry of Education, Youth and Sports of the CR
- Large Infrastructures for Research, Development and Innovation
- MU Faculty or unit
- Central European Institute of Technology
- Other MU Faculty/Unit
-
Institute of Computer Science
- prof. RNDr. Luděk Matyska, CSc.
- RNDr. Matej Antol, Ph.D.
- Mgr. Adam Bodnár
- Ing. Radoslav Čerhák
- Mgr. Ivana Křenková
- Mgr. Slávek Licehammer
- prof. RNDr. Luděk Matyska, CSc.
- Mgr. Zdeněk Salvet
- Project Website
- https://www.elixir-czech.cz/
- Cooperating Organization
-
Institute of Microbiology of the ASCR, v. v. i.
Institute of Molecular Genetics of the ASCR, v. v. i.
Institute of Organic Chemistry and Biochemistry of the ASCR, v. v. i.
- Responsible person RNDr. Jiří Vondrášek, CSc.
University of South Bohemia České Budějovice
Charles University
Palacký University, Olomouc
Prague Institute of Chemical Technology
University of West Bohemia in Pilsen
Czech Technical University Prague
St. Anne's University Hospital Brno
Biological Centre of the ASCR, v. v. i.
Institute of Biotechnology CAS
It is a current global trend that life science experiments generate an immense and steadily increasing volume of data. The Czech Republic feels this trend very strongly, because several new life science infrastructures were successfully established here, and they produce large amounts of data. It is necessary to store the data, safely manipulate with them, efficiently extract key information, etc. ELIXIR CZ is an infrastructure which is prepared to accept this challenge.
Thus, ELIXIR CZ aims to create a sustainable infrastructure for storing, processing and analysis of life science data in the Czech Republic. It will also provide tools and training that will facilitate performing these activities. Currently, ELIXIR CZ involves thirteen institutions - nine life science research centres and two IT infrastructures. ELIXIR CZ also creates a communication platform for life science research institutes in the Czech Republic. ELIXIR CZ is a node of the European ESFRI project ELIXIR and is strongly involved in its activities. The ELIXIR project was approved by the Competitiveness Council from ESFRI as one of three prioritised Research Infrastructures.
Sustainable Development Goals
Masaryk University is committed to the UN Sustainable Development Goals, which aim to improve the conditions and quality of life on our planet by 2030.
Publications
Total number of publications: 46
2024
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InVADo: Interactive Visual Analysis of Molecular Docking Data
IEEE Transactions on Visualization and Computer Graphics, year: 2024, volume: 30, edition: 4, DOI
2023
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Advancing Enzyme's Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning
ACS Catalysis, year: 2023, volume: 13, edition: 19, DOI
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Annotating Macromolecular Complexes in the Protein Data Bank: Improving the FAIRness of Structure Data
Scientific Data, year: 2023, volume: 10, edition: 1, DOI
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Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer’s Disease drug candidate
Molecular Neurodegeneration, year: 2023, volume: 18, edition: 1, DOI
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Evolution of genome size and GC content in the tribe Carduinae (Asteraceae): rare descending dysploidy and polyploidy, limited environmental control and strong phylogenetic signal
Preslia, year: 2023, volume: 95, edition: 1, DOI
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Fast satellite DNA evolution in Nothobranchius annual killifishes
Chromosome Research, year: 2023, volume: 31, edition: 4, DOI
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GERONIMO: A tool for systematic retrieval of structural RNAs in a broad evolutionary context
GigaScience, year: 2023, volume: 12, edition: October 2023, DOI
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In-depth analysis of biocatalysts by microfluidics: An emerging source of data for machine learning
Biotechnology Advances, year: 2023, volume: 66, edition: September 2023, DOI
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Proteases and their inhibitors involved in Schistosoma mansoni egg-host interaction revealed by comparative transcriptomics with Fasciola hepatica eggs
International Journal for Parasitology, year: 2023, volume: 53, edition: 5-6, DOI
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SISAP 2023 Indexing Challenge – Learned Metric Index
Similarity Search and Applications. SISAP 2023. Lecture Notes in Computer Science, vol 14289, year: 2023