Project information
Czech National Infrastructure for Biological Data
(ELIXIR-CZ)
- Project Identification
- LM2018131
- Project Period
- 1/2020 - 12/2022
- Investor / Pogramme / Project type
-
Ministry of Education, Youth and Sports of the CR
- Large Infrastructures for Research, Development and Innovation
- MU Faculty or unit
- Central European Institute of Technology
- Other MU Faculty/Unit
-
Institute of Computer Science
- prof. RNDr. Luděk Matyska, CSc.
- RNDr. Matej Antol, Ph.D.
- Mgr. Adam Bodnár
- Ing. Radoslav Čerhák
- Mgr. Ivana Křenková
- Mgr. Slávek Licehammer
- prof. RNDr. Luděk Matyska, CSc.
- Mgr. Zdeněk Salvet
- Project Website
- https://www.elixir-czech.cz/
- Cooperating Organization
-
Institute of Microbiology of the ASCR, v. v. i.
Institute of Molecular Genetics of the ASCR, v. v. i.
Institute of Organic Chemistry and Biochemistry of the ASCR, v. v. i.
- Responsible person RNDr. Jiří Vondrášek, CSc.
University of South Bohemia České Budějovice
Charles University
Palacký University, Olomouc
Prague Institute of Chemical Technology
University of West Bohemia in Pilsen
Czech Technical University Prague
St. Anne's University Hospital Brno
Biological Centre of the ASCR, v. v. i.
Institute of Biotechnology CAS
It is a current global trend that life science experiments generate an immense and steadily increasing volume of data. The Czech Republic feels this trend very strongly, because several new life science infrastructures were successfully established here, and they produce large amounts of data. It is necessary to store the data, safely manipulate with them, efficiently extract key information, etc. ELIXIR CZ is an infrastructure which is prepared to accept this challenge.
Thus, ELIXIR CZ aims to create a sustainable infrastructure for storing, processing and analysis of life science data in the Czech Republic. It will also provide tools and training that will facilitate performing these activities. Currently, ELIXIR CZ involves thirteen institutions - nine life science research centres and two IT infrastructures. ELIXIR CZ also creates a communication platform for life science research institutes in the Czech Republic. ELIXIR CZ is a node of the European ESFRI project ELIXIR and is strongly involved in its activities. The ELIXIR project was approved by the Competitiveness Council from ESFRI as one of three prioritised Research Infrastructures.
Sustainable Development Goals
Masaryk University is committed to the UN Sustainable Development Goals, which aim to improve the conditions and quality of life on our planet by 2030.
Publications
Total number of publications: 34
2023
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SISAP 2023 Indexing Challenge – Learned Metric Index
Similarity Search and Applications. SISAP 2023. Lecture Notes in Computer Science, vol 14289, year: 2023
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sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
IEEE Transactions on Visualization and Computer Graphics, year: 2023, volume: 29, edition: 1, DOI
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Telomerase RNA in Hymenoptera (Insecta) switched to plant/ciliate-like biogenesis
Nucleic acids research, year: 2023, volume: 51, edition: 1, DOI
2022
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CF Day Meeting
Year: 2022, type: Popularization text
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Computer-aided engineering of staphylokinase toward enhanced affinity and selectivity for plasmin
Computational and Structural Biotechnology Journal, year: 2022, volume: 20, edition: May 2022, DOI
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CoverView: clear atom-level visualization of electron density coverage of PDB structures to assist validation
Year: 2022
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Large-scale randomness study of security margins for 100+ cryptographic functions
Proceedings of the 19th International Conference on Security and Cryptography, year: 2022
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Learned Indexing in Proteins: Extended Work on Substituting Complex Distance Calculations with Embedding and Clustering Techniques
Year: 2022
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Learned Indexing in Proteins: Substituting Complex Distance Calculations with Embedding and Clustering Techniques
Similarity Search and Applications, 15th International Conference, SISAP 2022, Bologna, Italy, October 5–7, 2022, Proceedings, year: 2022
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Validation of cycle conformation in small molecules
Year: 2022, type: Conference abstract