2013

• Srs2 mediates PCNA-SUMO-dependent inhibition of DNA repair synthesis

  BURKOVICS Peter ŠEBESTA Marek SISÁKOVÁ Alexandra PLAULT Nicolas SZUKACSOV Valeria ROBERT Thomas PINTER Lajos MARINI PALOMEQUE María Victoria KOLESÁR Peter HARACSKA Lajos GANGLOFF Serge KREJČÍ Lumír

  Article in Periodical

  EMBO JOURNAL, year: 2013, volume: 32, edition: 5, DOI

2012

• A Novel Approach for Deriving Force Field Torsion Angle Parameters Accounting for Conformation-Dependent Solvation Effects

  ZGARBOVÁ Marie JAVIER LUQUE F. ŠPONER Jiří OTYEPKA Michal JUREČKA Petr

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 9, DOI

• Can We Accurately Describe the Structure of Adenine Tracts in B-DNA? Reference Quantum-Chemical Computations Reveal Overstabilization of Stacking by Molecular Mechanics

  BANÁŠ Pavel MLÁDEK Arnošt OTYEPKA Michal ZGARBOVA Marie JURECKA Petr SVOZIL Daniel LANKAŠ Filip ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI

• Dual roles of the SUMO-interacting motif in the regulation of Srs2 sumoylation.

  KOLESÁR Peter SARANGI Prabha ALTMANNOVÁ Veronika ZHAO Xiaolan KREJČÍ Lumír

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 16, DOI

• Formamide-Based Prebiotic Synthesis of Nucleobases: A Kinetically Accessible Reaction Route

  ŠPONEROVÁ Judit MLÁDEK Arnošt ŠPONER Jiří FUENTES-CABRERA Miguel

  Article in Periodical

  The Journal of Physical Chemistry A, year: 2012, volume: 116, edition: 1, DOI

• Homologous recombination and its regulation

  KREJČÍ Lumír ALTMANNOVÁ Veronika ŠPÍREK Mário ZHAO Xiaolan

  Article in Periodical

  Nucleic Acids Research, year: 2012, volume: 40, edition: 13, DOI

• Reference Simulations of Noncanonical Nucleic Acids with Different chi Variants of the AMBER Force Field: Quadruplex DNA, Quadruplex RNA, and Z-DNA

  KREPL Miroslav ZGARBOVA Marie STADLBAUER Petr OTYEPKA Michal BANÁŠ Pavel KOČA Jaroslav CHEATHAM Thomas E. JURECKA Petr ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2012, volume: 8, edition: 7, DOI

• Simulations of A-RNA Duplexes. The Effect of Sequence, Solute Force Field, Water Model, and Salt Concentration

  BEŠŠEOVÁ Ivana BANÁŠ Pavel KUEHROVA Petra KOSINOVA Pavlina OTYEPKA Michal ŠPONER Jiří

  Article in Periodical

  Journal of Physical Chemistry B, year: 2012, volume: 116, edition: 33, DOI

• SUMO Wrestles with Recombination

  ALTMANNOVÁ Veronika KOLESÁR Peter KREJČÍ Lumír

  Article in Periodical

  Biomolecules, year: 2012, volume: 2, edition: 3, DOI

• The DNA and RNA sugar–phosphate backbone emerges as the key player. An overview of quantum-chemical, structural biology and simulation studies

  ŠPONER Jiří MLÁDEK Arnošt ŠPONEROVÁ Judit SVOZIL Daniel ZGARBOVÁ Marie BANÁŠ Pavel JUREČKA Petr OTYEPKA Michal

  Article in Periodical

  PHYSICAL CHEMISTRY CHEMICAL PHYSICS, year: 2012, volume: 14, edition: 44, DOI