Loschmidt Laboratories of Protein Engineering

Articles

• Exploring new galaxies: Perspectives on the discovery of novel PET-degrading enzymes

  MIČAN Jan JARADAT Da 'san M. M. LIU Weidong WEBER Gert MAZURENKO Stanislav BORNSCHEUER Uwe T. DAMBORSKÝ Jiří WEI Ren BEDNÁŘ David

  Article in Periodical

  Applied Catalysis B: Environment and Energy, year: 2024, volume: 342, edition: March 2024, DOI

• FireProt 2.0: web-based platform for the fully automated design of thermostable proteins

  MUSIL Miloš JEZIK Andrej HORÁČKOVÁ Jana BORKO Simeon KABOUREK Petr DAMBORSKÝ Jiří BEDNÁŘ David

  Article in Periodical

  Briefings in Bioinformatics, year: 2024, volume: 25, edition: 1, DOI

• GASP: A Pan-Specific Predictor of Family 1 Glycosyltransferase Acceptor Specificity Enabled by a Pipeline for Substrate Feature Generation and Large-Scale Experimental Screening

  HARDING-LARSEN David MADSEN Christian Degnbol TEZE David KITTILA Tiia LANGHORN Mads Rosander GHARABLI Hani HOBUSCH Mandy OTALVARO Felipe Mejia KIRTEL Onur BIDART Gonzalo Nahuel MAZURENKO Stanislav TRAVNIK Evelyn WELNER Ditte Hededam

  Article in Periodical

  ACS Omega, year: 2024, volume: 9, edition: 25, DOI

• ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

  ŠPAČKOVÁ Anna VÁVRA Ondřej RAČEK Tomáš BAZGIER Václav SEHNAL David DAMBORSKÝ Jiří SVOBODOVÁ Radka BEDNÁŘ David BERKA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2024, volume: 52, edition: D1, DOI

• Identification of new endocrine disruptive transthyretin ligands in polluted waters using pull-down assay coupled to non-target mass spectrometry

  MIKUŠOVÁ Petra TOUŠOVÁ Zuzana SEHNAL Luděk KUTA Jan GRABICOVA K. FEDOROVA G. MAREK Martin GRABIC R. HILSCHEROVÁ Klára

  Article in Periodical

  Journal of Hazardous Materials, year: 2024, volume: 471, edition: June 2024, DOI

• InVADo: Interactive Visual Analysis of Molecular Docking Data

  SCHÄFER Marco BRICH Nicolas BYŠKA Jan MARQUES Sérgio Manuel BEDNÁŘ David THIEL Philipp KOZLÍKOVÁ Barbora KRONE Michael

  Article in Periodical

  IEEE Transactions on Visualization and Computer Graphics, year: 2024, volume: 30, edition: 4, DOI

• Investigation of long non-coding RNAs in extracellular vesicles from low-volume blood serum specimens of colorectal cancer patients

  BOUDNÁ Marie MACHÁČKOVÁ Táňa VYCHYTILOVÁ Petra TRACHTOVÁ Karolína BARTOŠOVÁ Renata CATELA IVKOVIĆ Tina AL TUKMACHI Dagmar JUGAS Robin PIFKOVÁ Lucie ORLÍČKOVÁ Jana KOTOUČEK Jan PAVLIKOVA Marketa ŠACHLOVÁ Milana BOHOVICOVÁ Lucia STANĚK Teodor HALÁMKOVÁ Jana KISS Igor GROLICH Tomáš SVOBODA Martin KALA Zdeněk SOUČKOVÁ Kamila SLABÝ Ondřej

  Article in Periodical

  CLINICAL AND EXPERIMENTAL MEDICINE, year: 2024, volume: 24, edition: 1, DOI

• Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes

  VÁVRA Ondřej TYZACK J. HADDADI Faraneh DVORSKÝ Jan DAMBORSKÝ Jiří MAZURENKO Stanislav THORNTON J.M. BEDNÁŘ David

  Article in Periodical

  Journal of Cheminformatics, year: 2024, volume: 16, edition: 1, DOI

• Mechanism of BCDX2-mediated RAD51 nucleation on short ssDNA stretches and fork DNA

  AKITA Masaki GIRVAN Paul ŠPÍREK Mário NOVÁČEK Jiří RUEDA David PROKOP Zbyněk KREJČÍ Lumír

  Article in Periodical

  Nucleic acids research, year: 2024, DOI

• Nano-enabled pesticides: a comprehensive toxicity assessment of tebuconazole nanoformulations with nematodes at single species and community level

  EGHBALINEJAD Mahleh HOFMAN Jakub HOFMAN Jakub KOTOUČEK Jan GRILLO Renato HOCHMANOVÁ Zuzana REIFF Nicola HOESS Sebastian

  Article in Periodical

  Environmental Sciences Europe, year: 2024, volume: 36, edition: 1, DOI