Dmitriy Chudakov, Ph.D., DSc.

2018

• VDJdb: a curated database of T-cell receptor sequences with known antigen specificity

  SHUGAY Mikhail BAGAEV D.V. ZVYAGIN I.V. VROOMANS R.M. CRAWFORD J.C. DOLTON G. KOMECH E.A. SYCHEVA A.L. KONEVA A.E. EGOROV E.S. ELISEEV A.V. VAN DYK E. DASH P. ATTAF M. RIUS C. LADELL K. MCLAREN J.E. MATTHEWS K.K. CLEMENS E.B. DOUEK D.C. LUCIANI F. VAN BAARLE D. KEDZIERSKA K. KESMIR C. THOMAS P.G. PRICE D.A. SEWELL A.K. CHUDAKOV Dmitriy

  Article in Periodical

  Nucleic Acids Research, year: 2018, volume: 46, edition: D1, DOI

2017

• A high-throughput assay for quantitative measurement of PCR errors

  SHAGIN D.A. SHAGINA I.A. ZARETSKY A.R. BARSOVA E.V. KELMANSON I.V. LUKYANOV S. CHUDAKOV Dmitriy SHUGAY Mikhail

  Article in Periodical

  Scientific reports, year: 2017, volume: 7, edition: JUN, DOI

• A new quantitative method for minimal residual disease monitoring based on next generation dequencing and digital PCR principal

  MAMEDOV IZ. KOMKOV AY. MIROSHNICHENKOVA AM. KOROBKOVA L. ZAPLETALOVÁ Eva MINERVINA AA. NUGMANOV GA. MAREČKOVÁ Andrea POPOV AM. JELÍNKOVÁ Hana LEBEDEV YB. OLSHANSKAYA YV. POSPÍŠILOVÁ Šárka MASCHAN MA. CHUDAKOV Dmitriy

  Conference abstract

  Year: 2017, type: Conference abstract

• Antigen receptor repertoire profiling from RNA-seq data

  BOLOTIN D.A. POSLAVSKY S. DAVYDOV Alexey Nikolayevich FRENKEL F.E. FANCHI L. ZOLOTAREVA O.I. HEMMERS S. PUTINTSEVA E.V. OBRAZTSOVA A.S. SHUGAY M. ATAULLAKHANOV R.I. RUDENSKY A.Y. SCHUMACHER T.N. CHUDAKOV Dmitriy

  Article in Periodical

  Nature biotechnology, year: 2017, volume: 35, edition: 10, DOI

• Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries

  SHAGIN D.A. TURCHANINOVA M.A. SHAGINA I.A. SHUGAY Mikhail ZARETSKY A.R. ZUEVA O.I. BOLOTIN D.A. LUKYANOV S. CHUDAKOV Dmitriy

  Article in Periodical

  BMC Genomics, year: 2017, volume: 18, edition: JUN, DOI

• Clonal selection in the human V delta 1 T cell repertoire indicates gamma delta TCR-dependent adaptive immune surveillance

  DAVEY M.S. WILLCOX C.R. JOYCE S.P. LADELL K. KASATSKAYA S.A. MCLAREN J.E. HUNTER S. SALIM M. MOHAMMED F. PRICE D.A. CHUDAKOV Dmitriy WILLCOX B.E.

  Article in Periodical

  Nature Communications, year: 2017, volume: 8, edition: MAR, DOI

• Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor

  KOST L.A. NIKITIN ES. IVANOVA V.O. SUNG U. PUTINTSEVA E.V. CHUDAKOV Dmitriy BALABAN P.M. LUKYANOV K.A. BOGDANOV A.M.

  Article in Periodical

  Plos one, year: 2017, volume: 12, edition: 9, DOI

• MAGERI: Computational pipeline for molecular-barcoded targeted resequencing

  SHUGAY Mikhail ZARETSKY A.R. SHAGIN D.A. SHAGINA I.A. VOLCHENKOV I.A. SHELENKOV A.A. LEBEDIN Mikhail BAGAEV D.V. LUKYANOV S. CHUDAKOV Dmitriy

  Article in Periodical

  PLoS Computational Biology, year: 2017, volume: 13, edition: 5, DOI

• Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

  POGORELYY M.V. ELHANATI Y. MARCOU Q. SYCHEVA A.L. KOMECH E.A. NAZAROV V.I. BRITANOVA Olga CHUDAKOV Dmitriy MAMEDOV I.Z. LEBEDEV Y.B. MORA T. WALCZAK A.M.

  Article in Periodical

  PLoS Computational Biology, year: 2017, volume: 13, edition: 7, DOI

• Stability and function of regulatory T cells expressing the transcription factor T-bet

  LEVINE A.G. MEDOZA A. HEMMERS S. MOLTEDO B. NIEC R.E. SCHIZAS M. HOYOS B.E. PUTINTSEVA E.V. CHAUDHRY A. DIKIY S. FUJISAWA S. CHUDAKOV Dmitriy TREUTING P.M. RUDENSKY A.Y.

  Article in Periodical

  Nature, year: 2017, volume: 546, edition: 7658, DOI