Dmitriy Chudakov, Ph.D., DSc.

2015

• MiXCR: software for comprehensive adaptive immunity profilig

  BOLOTIN Dmitry POSLAVSKY Stanislav MITROPHANOV Igor SHUGAY Mikhail MAMEDOV Ilgar Z. PUTINTSEVA Ekaterina V. CHUDAKOV Dmitriy

  Article in Periodical

  Nature Methods, year: 2015, volume: 12, edition: 5, DOI

• Quantitative Profiling of Immune Repertoires for Minor Lymphocyte Counts Using Unique Molecular Identifiers

  EGOROV Evgeny S. MERZLYAK Ekaterina M. SHELENKOV Andrew A. BRITANOVA Olga V. SHARONOV George V. STAROVEROV Dmitriy B. BOLOTIN Dmitriy A. DAVYDOV Alexey Nikolayevich BARSOVA Ekaterina LEBEDEV Yuriy B. SHUGAY Mikhail CHUDAKOV Dmitriy

  Article in Periodical

  Journal of immunology, year: 2015, volume: 194, edition: 12, DOI

• Sequencing rare T-cell populations

  SHUGAY Mikhail LUKYANOV Sergey CHUDAKOV Dmitriy

  Article in Periodical

  Oncotarget, year: 2015, volume: 6, edition: 37, DOI

• tcR: an R package for T cell receptor repertoire advanced data analysis

  NAZAROV Vadim I. POGORELYY Mikhail V. KOMECH Ekaterina A. ZVYAGIN Ivan V. BOLOTIN Dmitry SHUGAY Mikhail CHUDAKOV Dmitriy LEBEDEV Yury B. MAMEDOV Ilgar Z.

  Article in Periodical

  BMC Bioinformatics, year: 2015, volume: 16, edition: May, DOI

• VDJtools: Unifying post-analysis of T cell receptor repertoires

  SHUGAY Mikhail BAGAEV Dimitriy V. TURCHANINOVA Maria A. BOLOTIN Dmitry BRITANOVA Olga PUTINTSEVA Ekaterina V. POGORELYY Mikhail V. NAZAROV Vadim I. ZVYAGIN Ivan V. KIRGIZOVA Vitalina I. KIRGIZOV Kirill I. SKOROBOGATOVA Elena V. CHUDAKOV Dmitriy

  Article in Periodical

  PLOS Computational Biology, year: 2015, volume: 11, edition: 11, DOI

2014

• Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling

  BRITANOVA O.V. PUTINTSEVA E.V. SHUGAY M. MERZLYAK E.M. TURCHANINOVA M.A. STAROVEROV D.B. BOLOTIN D.A. LUKYANOV S. BOGDANOVA E.A. MAMEDOV I.Z. LEBEDEV Y.B. CHUDAKOV Dmitriy

  Article in Periodical

  Journal of immunology, year: 2014, volume: 192, edition: 6, DOI

• Towards error-free profiling of immune repertoires

  SHUGAY M. BRITANOVA O.V. MERZLYAK E.M. TURCHANINOVA M.A. MAMEDOV I.Z. TUGANBAEV T.R. BOLOTIN D.A. STAROVEROV D.B. PUTINTSEVA E.V. PLEVOVÁ Karla LINNEMANN C. SHAGIN D. POSPÍŠILOVÁ Šárka LUKYANOV S. SCHUMACHER T.N. CHUDAKOV Dmitriy

  Article in Periodical

  Nature Methods, year: 2014, volume: 11, edition: 6, DOI

2013

• Huge overlap of individual TCR beta repertoires

  SHUGAY M. BOLOTIN D. PUTINTSEVA E. POGORELYY M. MAMEDOV I. CHUDAKOV Dmitriy

  Article in Periodical

  Frontiers in Immunology, year: 2013, volume: 4, edition: Dec, DOI

• MiTCR: software for T cell receptor sequencing data analysis

  BOLOTIN DA SHUGAY M. MAMEDOV IZ PUTINTSEVA EV TURCHANINOVA MA ZVYAGIN I. BRITANOVA Olga CHUDAKOV Dmitriy

  Article in Periodical

  Nature Methods, year: 2013, volume: 10, edition: 9, DOI

• Mother and child T cell receptor repertoires: deep profiling study

  PUTINTSEVA E. BRITANOVA Olga STAROVEROV D. MERZLYAK E. TURCHANINOVA M. SHUGAY M. BOLOTIN D. POGORELYY M. MAMEDOV I. BOBRYNINA V. MASCHAN M. LEBEDEV Y. CHUDAKOV Dmitriy

  Article in Periodical

  Frontiers in Immunology, year: 2013, volume: 4, edition: Dec, DOI