Dmitriy Chudakov, Ph.D., DSc.

2023

• Large-scale template-based structural modeling of T-cell receptors with known antigen specificity reveals complementarity features

  SHCHERBININ Dmitrii S KARNAUKHOV Vadim K ZVYAGIN Ivan V CHUDAKOV Dmitriy SHUGAY Mikhail

  Article in Periodical

  Frontiers in immunology, year: 2023, volume: 14, edition: Aug, DOI

• Novel bimodal TRBD1-TRBD2 rearrangements with dual or absent D-region contribute to TRB V-(D)-J combinatorial diversity

  SMIRNOVA Anastasia O MIROSHNICHENKOVA Anna M BELYAEVA Laima D KELMANSON Ilya V LEBEDEV Yuri B MAMEDOV Ilgar Z CHUDAKOV Dmitriy KOMKOV Alexander Y

  Article in Periodical

  Frontiers in immunology, year: 2023, volume: 14, edition: Sep, DOI

• Targeted depletion of TRBV9<sup>+</sup> T cells as immunotherapy in a patient with ankylosing spondylitis

  BRITANOVA Olga V LUPYR Kseniia R STAROVEROV Dmitry B SHAGINA Irina A ALEKSANDROV Alexey A USTYUGOV Yakov Y SOMOV Dmitry V KLIMENKO Alesia SHOSTAK Nadejda A ZVYAGIN Ivan V STEPANOV Alexey V MERZLYAK Ekaterina M DAVYDOV Alexey Nikolayevich IZRAELSON Mark EGOROV Evgeniy S BOGDANOVA Ekaterina A VLADIMIROVA Anna K IAKOVLEV Pavel A FEDORENKO Denis A IVANOV Roman A SKVORTSOVA Veronika I LUKYANOV Sergey CHUDAKOV Dmitriy

  Article in Periodical

  NATURE MEDICINE, year: 2023, volume: 2023, edition: 29, DOI

• The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling

  SMIRNOVA Anastasia O MIROSHNICHENKOVA Anna M OLSHANSKAYA Yulia V MASCHAN Michael A LEBEDEV Yuri B CHUDAKOV Dmitriy MAMEDOV Ilgar Z KOMKOV Alexander

  Article in Periodical

  elife, year: 2023, volume: 12, edition: Jan, DOI

2022

• Different classes of genomic inserts contribute to human antibody diversity

  LEBEDIN Mikhail FOGLIERINI Mathilde KHORKOVA Svetlana GARCIA Clara Vazquez RATSWOHL Christoph DAVYDOV Alexey Nikolayevich TURCHANINOVA Maria A DAUBENBERGER Claudia CHUDAKOV Dmitriy LANZAVECCHIA Antonio KATHRIN de la Rosa

  Article in Periodical

  Proceedings of the National Academy of Sciences of the United States of America, year: 2022, volume: 119, edition: 36, DOI

2021

• Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection

  MINERVINA A.A. KOMECH E.A. TITOV A. KORAICHI M.B. ROSATI E. MAMEDOV Ilgar FRANKE A. EFIMOV G.A. CHUDAKOV Dmitriy MORA T. WALCZAK A.M. LEBEDEV Y.B. POGORELYY M.V.

  Article in Periodical

  elife, year: 2021, volume: 10, edition: JAN, DOI

2020

• CD4(+) T Follicular Helper Cells in Human Tonsils and Blood Are Clonally Convergent but Divergent from Non-Tfh CD4(+) Cells

  BRENNA E. DAVYDOV Alexey Nikolayevich LADELL K. MCLAREN J.E. BONAIUTI P. METSGER Maria RAMSDEN J.D. GILBERT S.C. LAMBE T. PRICE D.A. CAMPION S.L. CHUDAKOV Dmitriy BORROW P. MCMICHAEL A.J.

  Article in Periodical

  Cell Reports, year: 2020, volume: 30, edition: 1, DOI

• High-throughput sequencing of T-cell receptor alpha chain clonal rearrangements at the DNA level in lymphoid malignancies

  KOMKOV Alexander MIROSHNICHENKOVA Anna NUGMANOV Gaiaz POPOV Alexander POGORELYY Mikhail ZAPLETALOVÁ Eva JELINKOVA Hana POSPÍŠILOVÁ Šárka LEBEDEV Yuri CHUDAKOV Dmitriy OLSHANSKAYA Yulia PLEVOVÁ Karla MASCHAN Michael MAMEDOV Ilgar

  Article in Periodical

  British Journal of Haematology, year: 2020, volume: 188, edition: 5, DOI

• Measuring Intratumoral Heterogeneity of Immune Repertoires

  YUZHAKOVA D.V. VOLCHKOVA L.N. POGORELYY M.V. SEREBROVSKAYA E.O. SHAGINA I.A. BRYUSHKOVA E.A. NAKONECHNAYA T.O. IZOSIMOVA A.V. ZAVYALOVA D.S. KARABUT M.M. IZRAELSON M. SAMOYLENKO I.V. ZAGAINOV V.E. CHUDAKOV Dmitriy ZAGAYNOVA E.V. SHARONOV G.V.

  Article in Periodical

  Frontiers in Oncology, year: 2020, volume: 10, edition: MAY, DOI

• Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones

  MINERVINA A,A. POGORELYY M.V. KOMECH E.A. KARNAUKHOV V.K. BACHER P. ROSATI E. FRANKE E. CHUDAKOV Dmitriy MAMEDOV Ilgar LEBEDEV Y.B. MORA T. WALCZAK A.M.

  Article in Periodical

  elife, year: 2020, volume: 9, edition: FEB, DOI