Panagiotis Alexiou, PhD

2024

• Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

  MARTINEK Vlastimil MARTIN Jessica BELAIR Cedric PAYEA Matthew J MALLA Sulochan ALEXIOU Panagiotis MARAGKAKIS Manolis

  Article in Periodical

  NAR Genomics and Bioinformatics, year: 2024, volume: Vol. 6, edition: Issue 3, DOI

• Hormone-regulated expansins: Expression, localization, and cell wall biomechanics in Arabidopsis root growth

  ŠÁMALOVÁ Markéta MELNIKAVA Alesia ELSAYAD Kareem PEAUCELLE Alexis GAHUROVÁ Evelína GUMULEC Jaromír SPYROGLOU Ioannis ZEMLYANSKAYA Elena V UBOGOEVA Elena V BALKOVÁ Darina DEMKO Martin BLAVET Nicolas ALEXIOU Panagiotis BENES Vladimir MOUILLE Gregory HEJÁTKO Jan

  Article in Periodical

  Plant Physiology, year: 2024, volume: 194, edition: 1, DOI

• RBP-Tar – a searchable database for experimental RBP binding sites

  GREŠOVÁ Katarína RAČEK Tomáš MARTINEK Vlastimil ČECHÁK David SVOBODOVÁ Radka ALEXIOU Panagiotis

  Article in Periodical

  F1000Research, year: 2024, DOI

2023

• Analysis of chimeric reads characterises the diverse targetome of AGO2-mediated regulation

  HEJRET Václav VARADARAJAN Nandan Mysore KLIMENTOVÁ Eva GREŠOVÁ Katarína GIASSA Ilektra-Chara VAŇÁČOVÁ Štěpánka ALEXIOU Panagiotis

  Article in Periodical

  Scientific Reports, year: 2023, volume: 13, edition: 1, DOI

• CATSNAP: a user-friendly algorithm for determining the conservation of protein variants reveals extensive parallelisms in the evolution of alternative splicing

  TIMOFEYENKO Kseniya KANAVALAU Dzmitry ALEXIOU Panagiotis KALYNA Maria RŮŽIČKA Kamil

  Article in Periodical

  New Phytologist, year: 2023, volume: 238, edition: 4, DOI

• Genomic benchmarks: a collection of datasets for genomic sequence classification

  GREŠOVÁ Katarína MARTINEK Vlastimil ČECHÁK David ŠIMEČEK Petr ALEXIOU Panagiotis

  Article in Periodical

  BMC Genomic Data, year: 2023, volume: 24, edition: 1, DOI

• The SAP domain of Ku facilitates its efficient loading onto DNA ends

  FULNEČEK Jaroslav KLIMENTOVÁ Eva CAIRO CALZADA Albert BUKOVČÁKOVÁ Soňa ALEXIOU Panagiotis PROKOP Zbyněk ŘÍHA Karel

  Article in Periodical

  Nucleic Acids Research, year: 2023, volume: 51, edition: 21, DOI

• Transfer Learning Allows Accurate RBP Target Site Prediction with Limited Sample Sizes

  VACULÍK Ondřej CHALUPOVÁ Eliška GREŠOVÁ Katarína MAJTNER Tomáš ALEXIOU Panagiotis

  Article in Periodical

  Biology, year: 2023, volume: 12, edition: 10, DOI

• Using Attribution Sequence Alignment to Interpret Deep Learning Models for miRNA Binding Site Prediction

  GREŠOVÁ Katarína VACULÍK Ondřej ALEXIOU Panagiotis

  Article in Periodical

  Biology, year: 2023, volume: 12, edition: 3, DOI

2022

• ENNGene: an Easy Neural Network model building tool for Genomics

  CHALUPOVÁ Eliška VACULÍK Ondřej POLÁČEK Jakub JOZEFOV Filip MAJTNER Tomáš ALEXIOU Panagiotis

  Article in Periodical

  BMC Genomics, year: 2022, volume: 23, edition: 1, DOI