Panagiotis Alexiou, PhD

2022

• Genomic Benchmarks: A Collection of Datasets for Genomic Sequence Classification

  GREŠOVÁ Katarína ŠIMEČEK Petr MARTINEK Vlastimil ČECHÁK David ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

• miRBind: a Deep Learning method for miRNA binding classification

  KLIMENTOVÁ Eva HEJRET Václav GREŠOVÁ Katarína GIASSA Ilektra-Chara ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

• miRBind: A Deep Learning Method for miRNA Binding Classification

  KLIMENTOVÁ Eva HEJRET Václav KRČMÁŘ Ján GREŠOVÁ Katarína GIASSA Ilektra-Chara ALEXIOU Panagiotis

  Article in Periodical

  GENES, year: 2022, volume: 13, edition: 12, DOI

• Noncanonical small RNA chimeras identified by AGO2-CLASH

  HEJRET Václav VARADARAJAN Nandan Mysore KLIMENTOVÁ Eva GIASSA Ilektra-Chara VAŇÁČOVÁ Štěpánka ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

• PENGUINN-RNA: prediction of RNA G-quadruplexes using interpretable Neural Networks

  BHAGAT Kriti GIASSA Ilektra-Chara ALEXIOU Panagiotis

  Conference abstract

  Year: 2022, type: Conference abstract

• Small RNA Targets: Advances in Prediction Tools and High-Throughput Profiling

  GREŠOVÁ Katarína ALEXIOU Panagiotis GIASSA Ilektra-Chara

  Article in Periodical

  BIOLOGY-BASEL, year: 2022, volume: 11, edition: 12, DOI

2021

• Bioinformatics and Machine Learning Approaches to Understand the Regulation of Mobile Genetic Elements

  GIASSA Ilektra-Chara ALEXIOU Panagiotis

  Article in Periodical

  BIOLOGY-BASEL, year: 2021, volume: 10, edition: 9, DOI

• DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs

  PERDIKOPANIS N. GEORGAKILAS Georgios GRIGORIADIS D. PIERROS V. KAVAKIOTIS I. ALEXIOU Panagiotis HATZIGEORGIOU A.

  Article in Periodical

  Nucleic acids research, year: 2021, volume: 49, edition: D1, DOI

2020

• CDK9 activity is critical for maintaining MDM4 overexpression in tumor cells

  ŠTĚTKOVÁ Monika GROWKOVÁ Kateřina FOJTÍK Petr VALČÍKOVÁ Barbora PALUŠOVÁ Veronika VERLANDE Amandine JORDA Radek KRYŠTOF Vladimír HEJRET Václav ALEXIOU Panagiotis ROTREKL Vladimír ULDRIJAN Stjepan

  Article in Periodical

  CELL DEATH & DISEASE, year: 2020, volume: 11, edition: 9, DOI

• Multi-branch Convolutional Neural Network for Identification of Small Non-coding RNA genomic loci

  GEORGAKILAS Georgios GRIONI Andrea LIAKOS Konstantinos G. CHALUPOVÁ Eliška PLESSAS Fotis C. ALEXIOU Panagiotis

  Article in Periodical

  Scientific reports, year: 2020, volume: 10, edition: 1, DOI