prof. RNDr. Michal Otyepka, Ph.D.

2011

• Biodegradation of 1,2,3-Trichloropropane

  DAMBORSKÝ Jiří DVOŘÁK Pavel PROKOP Zbyněk CHALOUPKOVÁ Radka PAVLOVÁ Martina KLVAŇA Martin OTYEPKA Michal WADE R .C. NAGATA Z. HRDLIČKOVÁ Eva STLOUKAL R.

  Year: 2011, type:

• Noncanonical Hydrogen Bonding in Nucleic Acids. Benchmark Evaluation of Key Base-Phosphate Interactions in Folded RNA Molecules Using Quantum-Chemical Calculations and Molecular Dynamics Simulations

  ZGARBOVA Marie JUREČKA Petr BANÁŠ Pavel OTYEPKA Michal ŠPONEROVÁ Judit LEONTIS Neocles B. ZIRBEL Craig L. ŠPONER Jiří

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY A, year: 2011, volume: 115, edition: 41, DOI

• QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms

  MLÝNSKÝ Vojtěch BANÁŠ Pavel WALTER Nils G. ŠPONER Jiří OTYEPKA Michal

  Article in Periodical

  JOURNAL OF PHYSICAL CHEMISTRY B, year: 2011, volume: 115, edition: 47, DOI

2010

• Conformational Energies of DNA Sugar Phosphate Backbone: Reference QM Calculations and a Comparison with Density Functional Theory and Molecular Mechanics

  MLÁDEK Arnošt ŠPONEROVÁ Judit JUREČKA Petr BANÁŠ Pavel OTYEPKA Michal SVOZIL Daniel ŠPONER Jiří

  Article in Periodical

  Journal of Chemical Theory and Computation, year: 2010, volume: 6/2010, edition: 12

2009

• Design and Evolution of Haloalkane Dehalogenase with Enhanced Conversion of 1,2,3-Trichloropropane by Modification of Access Tunnels

  PAVLOVÁ Martina KLVAŇA Martin CHALOUPKOVÁ Radka BANÁŠ Pavel OTYEPKA Michal WADE Rebecca NAGATA Yuji DAMBORSKÝ Jiří

  Article in Periodical

  Nature Chemical Biology, year: 2009, volume: 5, edition: xx

• Redesigning Dehalogenase Access Tunnels as a Strategy for Degrading an Anthropogenic Substrate.

  PAVLOVÁ Martina KLVAŇA Martin CHALOUPKOVÁ Radka BANÁŠ Pavel OTYEPKA Michal WADE R. NAGATA Yuji DAMBORSKÝ Jiří

  Article in Periodical

  NATURE CHEMICAL BIOLOGY, year: 2009, volume: 0000, edition: 5

2007

• MOLE: A Voronoi Diagram-based Explorer of Molecular Channels, Pores and Tunnels

  PETŘEK Martin KOŠINOVÁ Pavlína KOČA Jaroslav OTYEPKA Michal

  Article in Periodical

  Structure, year: 2007, volume: 15, edition: 15