doc. RNDr. Radka Svobodová, Ph.D.

2015

• High-quality and universal empirical atomic charges for chemoinformatics applications

  GEIDL Stanislav BOUCHAL Tomáš RAČEK Tomáš SVOBODOVÁ VAŘEKOVÁ Radka HEJRET Václav KŘENEK Aleš ABAGYAN Ruben KOČA Jaroslav

  Article in Periodical

  Journal of Cheminformatics, year: 2015, volume: 7, edition: DEC, DOI

• How Does the Methodology of 3D Structure Preparation Influence the Quality of pK(a) Prediction?

  GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka BENDOVÁ Veronika PETRUSEK Lukáš IONESCU Crina-Maria JURKA Zdeněk ABAGYAN Ruben A. KOČA Jaroslav

  Article in Periodical

  Journal of Chemical Information and Modeling, year: 2015, volume: 55, edition: 6, DOI

• MOLE 2.5: Improved Tool for Analysis of Ligand-Accessible Channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

• MotiveQuery: Web application for fast detection of biomacromolecular fragments in the entire Protein Data Bank

  SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš SEHNAL David IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

• PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

  SEHNAL David PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka IONESCU Crina-Maria KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2015, volume: 43, edition: W1, DOI

• PatternQuery: Web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

  PRAVDA Lukáš SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

• ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

  SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka PRAVDA Lukáš IONESCU Crina-Maria GEIDL Stanislav HORSKÝ Vladimír JAISWAL Deepti WIMMEROVÁ Michaela KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2015, volume: 43, edition: D1, DOI

• ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

  SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David PRAVDA Lukáš IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

• WebChemistry: a platform for the detection, validation, comparison, and characterization of structural patterns in biomacromolecules

  SEHNAL David PRAVDA Lukáš IONESCU Crina-Maria SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2015, type: Appeared in Conference without Proceedings

2014

• Anatomy of enzymatic channels and algorithm for its detection

  PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings