doc. RNDr. Radka Svobodová, Ph.D.

2014

• Anatomy of Enzyme Channels

  PRAVDA Lukáš BERKA Karel SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David BANÁŠ Pavel ROMAN A Laskowski KOČA Jaroslav OTYEPKA Michal

  Article in Periodical

  BMC Bioinformatics, year: 2014, volume: 15, edition: november, DOI

• Atomic charge based descriptors and their applications in QSAR

  SVOBODOVÁ VAŘEKOVÁ Radka GEIDL Stanislav SEHNAL David PRAVDA Lukáš JURKA Zdeněk IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Consistency of sugar structures and their annotation in the PDB

  JAISWAL Deepti SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• How the methodology of 3D structure preparation influences the quality of pKa prediction?

  GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka PETRUSEK Lukáš IONESCU Crina-Maria SEHNAL David KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Jaký vliv na přesnost QSPR modelů má metodika přípravy 3D struktury? Případová studie pro predikci pKa.

  GEIDL Stanislav SVOBODOVÁ VAŘEKOVÁ Radka PETRUSEK Lukáš SEHNAL David KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• Ligand structures in the Protein Data Bank – can we trust them?

  SEHNAL David SVOBODOVÁ VAŘEKOVÁ Radka IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš JAISWAL Deepti WIMMEROVÁ Michaela KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• MOLE: Pokročilý nástroj pro vyhledávání a charakterizaci tunelů

  PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria BERKA Karel OTYEPKA Michal KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• MotiveQuery: Language and Web Service for Fast Identification of Protein Structural Motifs in the Entire Protein Data Bank

  PRAVDA Lukáš SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David IONESCU Crina-Maria KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2014, type: Appeared in Conference without Proceedings

• MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

  SVOBODOVÁ VAŘEKOVÁ Radka JAISWAL Deepti SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Article in Periodical

  Nucleic Acids Research, year: 2014, volume: 42, edition: W1, DOI

• MotiveValidator: software for validation of ligand and residue structures in biomolecular complexes

  SVOBODOVÁ VAŘEKOVÁ Radka JAISWAL Deepti SEHNAL David IONESCU Crina-Maria GEIDL Stanislav PRAVDA Lukáš HORSKÝ Vladimír WIMMEROVÁ Michaela KOČA Jaroslav

  Year: 2014