Project information
Biomolecular centre
- Project Identification
- LC06030
- Project Period
- 3/2006 - 12/2011
- Investor / Pogramme / Project type
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Ministry of Education, Youth and Sports of the CR
- Basic Research Center
- MU Faculty or unit
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Central European Institute of Technology
- prof. RNDr. Vladimír Sklenář, DrSc.
- Keywords
- Cancer drugs, biosensors, lectins, molecular modeling of biomolecules, biomolecular NMR
- Cooperating Organization
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Institute of Biophysics
- Responsible person prof. RNDr. Jiří Šponer, DrSc.
- Responsible person doc. RNDr. Ivan Rychlík, Ph.D.
The main goal of the project is to elevate the structural biology in the Czech Republic from studies of individual biomacromolecules to investigations of their complexes. This goal will be achieved by implementation of up-to-date methodology in selected scientific fields (NMR spectroscopy, computational modeling) and by focusing on problems, which are currently in the centre of interest of contemporary life sciences. Among others, key cell processes such as preservation of genome stability and DNA repair, ribosomal protein synthesis, or information transfer by recognition (lectins) will be studied. Selected research projects will lead eventually to bioanalytical (biosensors) and biomedical (vaccines, chemotherapeutics) outcomes with potential applications in research and development. To reach the outlined goals, active collaboration of participating institutions is inevitable. A number of projects will require also a broad international collaboration.
Results
The main goal of the project is to help to drive structural biology in the Czech Republic from studies on single biomacromolecules to studies on biomacromolecular complexes. To achieve the goal, we will implement recent advances in selected key methods in the field (NMR spectrometry, computer modeling) and also contribute to their development. The research will be oriented not only to the structure of biomacromolecules but will also include studies of structure/function relationship. It will touch suchimportant phenomena of the cell life as keeping genome stability, DNA repair, protein synthesis in the ribosome or information transfer via recognition (lectins). Selected parts of the research will be devoted to bioanalytical (biosensors) or biomedicinal(vaccines, chemotherapeutics) projects capable of providing results with potential applications at the practical level. By solving the above scientific tasks, the team will increase its international competitiveness. At the same time, the project will
Publications
Total number of publications: 284
2009
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Co-operativity of Mus81-Mms4 with Rad54 in the resolution of recombination and replication intermediates.
J Biol Chem., year: 2009, volume: 284, edition: 12
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CRACKING THE LECTIN CODE ; IN SILICO MODELING AND STRUCTURE-FUNCTIONAL STUDY OF PRINCIPLES DRIVING SUGAR PREFERENCE IN PAIIL FAMILY
FEBS Journal, year: 2009
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Deciphering the lectin code by means of molecular modelling correlated with structure-functional experimental studies
XIII. Setkání biochemiků a molekulárních biologů, year: 2009
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Dependence of A-RNA simulations on the choice of the force field and salt strength
Physical Chemistry Chemical Physics, year: 2009, volume: 11, edition: -
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Differences in conformational behavior of amyloid beta in solvent with different ionic strength
34th Congress of the Federation-of-European-Biochemical-Societies, year: 2009
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DNA OPRAVA A NESTABILITA GENOMU
Year: 2009, type: R&D Presentation
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DNA repair and its quality control
Year: 2009, type: R&D Presentation
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DNA repair mechanisms in yeast
37th Annual Conference on Yeast, year: 2009
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Effect of Ionic Strength on Conformational Behavior of Beta Amyloids. A Computational Study.
Year: 2009, type: Conference abstract
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Effects of Restrained Sampling Space and Nonplanar Amino Groups on Free-Energy Predictions for RNA with Imino and Sheared Tandem GA Base Pairs Flanked by GC, CG, iGiC or iCIG Base Pairs
Journal of Chemical Theory and Computation, year: 2009, volume: 5, edition: 8