Project information
Czech National Infrastructure for Biological Data
(ELIXIR-CZ)
- Project Identification
- LM2015047
- Project Period
- 1/2016 - 12/2019
- Investor / Pogramme / Project type
-
Ministry of Education, Youth and Sports of the CR
- Large Infrastructures for Research, Development and Innovation
- MU Faculty or unit
-
Central European Institute of Technology
- prof. RNDr. Jaroslav Koča, DrSc.
- RNDr. Petr Kulhánek, Ph.D.
- Mgr. Martin Prokop, Ph.D.
- RNDr. Tomáš Raček, Ph.D.
- RNDr. David Sehnal, Ph.D.
- doc. RNDr. Radka Svobodová, Ph.D.
- prof. RNDr. Michaela Wimmerová, Ph.D.
- Other MU Faculty/Unit
-
Institute of Computer Science
- prof. RNDr. Luděk Matyska, CSc.
- Mgr. Ivana Křenková
- Mgr. Slávek Licehammer
- RNDr. Michal Procházka, Ph.D.
- Mgr. Zdeněk Salvet
- Project Website
- https://www.elixir-czech.cz/
- Cooperating Organization
-
Institute of Microbiology of the ASCR, v. v. i.
Institute of Molecular Genetics of the ASCR, v. v. i.
Institute of Organic Chemistry and Biochemistry of the ASCR, v. v. i.
- Responsible person RNDr. Jiří Vondrášek, CSc.
University of South Bohemia České Budějovice
Charles University
Palacký University, Olomouc
Prague Institute of Chemical Technology
St. Anne's University Hospital Brno
Biological Centre of the ASCR, v. v. i.
Institute of Biotechnology CAS
It is a current global trend that life science experiments generate an immense and steadily increasing volume of data. The Czech Republic feels this trend very strongly, because several new life science infrastructures were successfully established here, and they produce large amounts of data. It is necessary to store the data, safely manipulate with them, efficiently extract key information, etc. ELIXIR CZ is an infrastructure which is prepared to accept this challenge.
Thus, ELIXIR CZ aims to create a sustainable infrastructure for storing, processing and analysis of life science data in the Czech Republic. It will also provide tools and training that will facilitate performing these activities. Currently, ELIXIR CZ involves eleven institutions - nine life science research centres and two IT infrastructures. ELIXIR CZ also creates a communication platform for life science research institutes in the Czech Republic. ELIXIR CZ is a node of the European ESFRI project ELIXIR and is strongly involved in its activities. The ELIXIR project was approved by the Competitiveness Council from ESFRI as one of three prioritised Research Infrastructures.
Publications
Total number of publications: 68
2021
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Repeat proliferation and partial endoreplication jointly shape the patterns of genome size evolution in orchids
Plant Journal, year: 2021, volume: 107, edition: 2, DOI
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Stabilization of Haloalkane Dehalogenase Structure by Interfacial Interaction with Ionic Liquids
Crystals, year: 2021, volume: 11, edition: 9, DOI
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The tetrameric structure of the novel haloalkane dehalogenase DpaA from Paraglaciecola agarilytica NO2
Acta Crystallographica Section D: Structural Biology, year: 2021, volume: 77, edition: March 2021, DOI
2020
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A Haloalkane Dehalogenase from Saccharomonospora viridis Strain DSM 43017, a Compost Bacterium with Unusual Catalytic Residues, Unique (S)-Enantiopreference, and High Thermostability
Applied and Environmental Microbiology, year: 2020, volume: 86, edition: 17, DOI
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CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
IEEE/ACM Transactions on Computational Biology and Bioinformatics, year: 2020, volume: 17, edition: 5, DOI
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Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst
Chemical Science, year: 2020, volume: 11, edition: 41, DOI
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DockVis: Visual Analysis of Molecular Docking Trajectories
Computer Graphics Forum, year: 2020, volume: 39, edition: 6, DOI
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EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities
Nucleic acids research, year: 2020, volume: 48, edition: W1, DOI
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Genome Evolution in Arabideae Was Marked by Frequent Centromere Repositioning
The Plant Cell, year: 2020, volume: 32, edition: 3, DOI
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Machine Learning in Enzyme Engineering
ACS Catalysis, year: 2020, volume: 10, edition: 2, DOI