Project information
Czech National Infrastructure for Biological Data
(ELIXIR-CZ)
- Project Identification
- LM2015047
- Project Period
- 1/2016 - 12/2019
- Investor / Pogramme / Project type
-
Ministry of Education, Youth and Sports of the CR
- Large Infrastructures for Research, Development and Innovation
- MU Faculty or unit
-
Central European Institute of Technology
- prof. RNDr. Jaroslav Koča, DrSc.
- RNDr. Petr Kulhánek, Ph.D.
- Mgr. Martin Prokop, Ph.D.
- RNDr. Tomáš Raček, Ph.D.
- RNDr. David Sehnal, Ph.D.
- doc. RNDr. Radka Svobodová, Ph.D.
- prof. RNDr. Michaela Wimmerová, Ph.D.
- Other MU Faculty/Unit
-
Institute of Computer Science
- prof. RNDr. Luděk Matyska, CSc.
- Mgr. Ivana Křenková
- Mgr. Slávek Licehammer
- RNDr. Michal Procházka, Ph.D.
- Mgr. Zdeněk Salvet
- Project Website
- https://www.elixir-czech.cz/
- Cooperating Organization
-
Institute of Microbiology of the ASCR, v. v. i.
Institute of Molecular Genetics of the ASCR, v. v. i.
Institute of Organic Chemistry and Biochemistry of the ASCR, v. v. i.
- Responsible person RNDr. Jiří Vondrášek, CSc.
University of South Bohemia České Budějovice
Charles University
Palacký University, Olomouc
Prague Institute of Chemical Technology
St. Anne's University Hospital Brno
Biological Centre of the ASCR, v. v. i.
Institute of Biotechnology CAS
It is a current global trend that life science experiments generate an immense and steadily increasing volume of data. The Czech Republic feels this trend very strongly, because several new life science infrastructures were successfully established here, and they produce large amounts of data. It is necessary to store the data, safely manipulate with them, efficiently extract key information, etc. ELIXIR CZ is an infrastructure which is prepared to accept this challenge.
Thus, ELIXIR CZ aims to create a sustainable infrastructure for storing, processing and analysis of life science data in the Czech Republic. It will also provide tools and training that will facilitate performing these activities. Currently, ELIXIR CZ involves eleven institutions - nine life science research centres and two IT infrastructures. ELIXIR CZ also creates a communication platform for life science research institutes in the Czech Republic. ELIXIR CZ is a node of the European ESFRI project ELIXIR and is strongly involved in its activities. The ELIXIR project was approved by the Competitiveness Council from ESFRI as one of three prioritised Research Infrastructures.
Publications
Total number of publications: 68
2019
-
Transhalogenation Catalysed by Haloalkane Dehalogenases Engineered to Stop Natural Pathway at Intermediate
ADVANCED SYNTHESIS & CATALYSIS, year: 2019, volume: 361, edition: 11, DOI
-
ValTrendsDB: bringing Protein Data Bank validation information closer to the user
Bioinformatics, year: 2019, volume: 35, edition: 24, DOI
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ValTrendsDB: Database of biomacromolecular structure validation trends
Year: 2019
2018
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CalFitter: a web server for analysis of protein thermal denaturation data
Nucleic Acids Research, year: 2018, volume: 46, edition: W1, DOI
-
CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories
Bioinformatics, year: 2018, volume: 34, edition: 20, DOI
-
Common ELIXIR Service for Researcher Authentication and Authorisation
F1000Research, year: 2018, volume: 7, edition: 2018, DOI
-
Computer-assisted engineering of hyperstable fibroblast growth factor 2
Biotechnology and Bioengineering, year: 2018, volume: 115, edition: 4, DOI
-
Evolutionary Analysis As a Powerful Complement to Energy Calculations for Protein Stabilization
ACS Catalysis, year: 2018, volume: 8, edition: 10, DOI
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Exploration of Enzyme Diversity by Integrating Bioinformatics with Expression Analysis and Biochemical Characterization
ACS Catalysis, year: 2018, volume: 8, edition: 3, DOI
-
Gram-scale Production of Recombinant Microbial Enzymes in Shake Flasks
FEMS Microbiology Letters, year: 2018, volume: 365, edition: 2, DOI