doc. RNDr. Radka Svobodová, Ph.D.

2011

• Zpracování dat z vysoce výkonných sekvenátorů

  OPPELT Jan TICHÝ Boris MRÁZ Marek SVOBODOVÁ VAŘEKOVÁ Radka KOČA Jaroslav

  Appeared in Conference without Proceedings

  Year: 2011, type: Appeared in Conference without Proceedings

2010

• Fast methods of atomic charge calculation: parameterization of EEM for applicability to metal containing proteins

  IONESCU Crina-Maria SVOBODOVÁ VAŘEKOVÁ Radka VANĚK Jakub KOČA Jaroslav

  Article in Proceedings

  8th Discussions in Structural Molecular Biology, year: 2010

• Fast methods of atomic charge calculation: parameterization of EEM for applicability to proteins

  IONESCU Crina-Maria SVOBODOVÁ VAŘEKOVÁ Radka RADĚJ Tomáš SKŘEHOTA Ondřej KOČA Jaroslav

  Article in Proceedings

  8th European Conference on Computational Chemistry, year: 2010

• QSPR Designer - a program to design and evaluate QSPR models. Case study on pKa prediction

  SKŘEHOTA Ondřej SVOBODOVÁ VAŘEKOVÁ Radka GEIDL Stanislav KUDERA Michal SEHNAL David IONESCU Crina-Maria KOČA Jaroslav

  Article in Proceedings

  6th German Conference on Chemoinformatics, year: 2010

• SiteBinder – software tool for superimposing multiple structural motives

  SVOBODOVÁ VAŘEKOVÁ Radka SEHNAL David PRAVDA Lukáš OPPELT Jan KOČA Jaroslav

  Article in Proceedings

  8th Discussions in Structural Molecular Biology, year: 2010

2009

• Electronegativity Equalization Method - Fast Method For Charge Calculation

  NOVOTNÁ JIROUŠKOVÁ Zuzana SVOBODOVÁ VAŘEKOVÁ Radka VANĚK Jakub KOČA Jaroslav

  Conference abstract

  Year: 2009, type: Conference abstract

2008

• Software news and updates: Electronegativity equalization method: Parameterization and validation for organic molecules using the Merz-Kollman-Singh charge distribution scheme

  JIROUŠKOVÁ Zuzana SVOBODOVÁ VAŘEKOVÁ Radka VANĚK Jakub KOČA Jaroslav

  Article in Periodical

  Journal of Computational Chemistry, year: 2008, volume: 2009, edition: 30

• Web server to identify similarity of amino acid motifs to compounds (SAAMCO)

  CASEY Fergal P. DAVEY Norman E BARAN Ivan SVOBODOVÁ VAŘEKOVÁ Radka SHIELDS Denis C

  Article in Periodical

  Journal of Chemical Information and Modeling, year: 2008, volume: 48, edition: 7

• www.rnaworkbench.com: A new program for analyzing RNA interference

  SVOBODOVÁ VAŘEKOVÁ Radka BRADÁČ Ivan PLCHÚT Martin ŠKRDLA Michal WACENOVSKY Michael MAHR Helmuth MAYER Georg TANNER Herbert BRUGGER Hermann WITHALM Josef LEDERER Peter HUBER Heinrich GIERLINGER Gerhard GRAF Ronald TAFER Hakim HOFACKER Ivo SCHUSTER Peter POLCIK Martin

  Article in Periodical

  Computer Methods and Programs in Biomedicine, year: 2008, volume: 90, edition: 1

2007

• Electronegativity Equalization Method: Parameterization and Validation for Large Sets of Organic, Organohalogene and Organometal Molecule

  SVOBODOVÁ VAŘEKOVÁ Radka JIROUŠKOVÁ Zuzana VANĚK Jakub SUCHOMEL Šimon KOČA Jaroslav

  Article in Periodical

  International Journal of Molecular Sciences, year: 2007, volume: 2007, edition: 8