doc. RNDr. Radka Svobodová, Ph.D.

Head of Core Facility, Biological Data Management and Analysis Core Facility

office: bldg. C04/233
Kamenice 753/5
625 00 Brno

Show on the map

phone:	+420 549 49 4860
e‑mail:

social and academic networks:

Basic information

Type

Total number of publications: 179

2023

Management of life-science data and their metadata

RAČEK Tomáš SVOBODA Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2023, type: Appeared in Conference without Proceedings
Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations

CHARESHNEU Aliaksei MIDLIK Adam IONESCU Crina-Maria ROSE Alexander HORSKÝ Vladimír CANTARA Alessio SVOBODOVÁ Radka BERKA Karel SEHNAL David

Article in Periodical

Nucleic Acids Research, year: 2023, volume: 51, edition: W1, DOI
New ways of protein family visualization in AlphaFold era

SVOBODOVÁ Radka BERKA Karel HUTAŘOVÁ VAŘEKOVÁ Ivana RAČEK Tomáš SCHINDLER Ondřej

Appeared in Conference without Proceedings

Year: 2023, type: Appeared in Conference without Proceedings
Onedata4Sci: Life-science experimental datasets management system

ROŠINEC Adrián SVOBODA Tomáš RAČEK Tomáš HANDL Josef SABO Jozef KŘENEK Aleš SVOBODOVÁ Radka

Conference abstract

Year: 2023, type: Conference abstract
αCharges: partial atomic charges for AlphaFold structures in high quality

SCHINDLER Ondřej BERKA Karel CANTARA Alessio KŘENEK Aleš TICHÝ Dominik RAČEK Tomáš SVOBODOVÁ Radka

Article in Periodical

Nucleic Acids Research, year: 2023, volume: 51, edition: W1, DOI

2022

Alphacharges - a web service for calculating QM-like partial atomic charges for AlphaFold proteins

SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka

Appeared in Conference without Proceedings

Year: 2022, type: Appeared in Conference without Proceedings
Atomic Charge Calculator II – a web service for calculating partial atomic charges

RAČEK Tomáš SCHINDLER Ondřej PTÁČNÍKOVÁ Lenka SVOBODOVÁ Radka

Conference abstract

Year: 2022, type: Conference abstract
CF Day Meeting

SKLENÁŘ Vladimír FIALA Radovan NOVÁČEK Jiří HOUSER Josef PŘIBYL Jan ZDRÁHAL Zbyněk EŠNER Milan MIKL Michal TICHÝ Boris BYSTRÝ Vojtěch SVOBODOVÁ Radka

Popularization text

Year: 2022, type: Popularization text
CoverView: clear atom-level visualization of electron density coverage of PDB structures to assist validation

CHARESHNEU Aliaksei SEHNAL David SVOBODOVÁ Radka

Year: 2022
OverProt: secondary structure consensus for protein families

MIDLIK Adam HUTAŘOVÁ VAŘEKOVÁ Ivana HUTAŘ Jan CHARESHNEU Aliaksei BERKA Karel SVOBODOVÁ Radka

Article in Periodical

Bioinformatics, year: 2022, volume: 38, edition: 14, DOI