doc. RNDr. Radka Svobodová, Ph.D.

2021

• Uncovering of cytochrome P450 anatomy by SecStrAnnotator

  MIDLIK Adam NAVRÁTILOVÁ Veronika MOTURU Tarakaramji KOČA Jaroslav SVOBODOVÁ Radka BERKA K.

  Article in Periodical

  Nature Scientific Reports, year: 2021, volume: 11, edition: 1, DOI

2020

• Atomic Charge Calculator II: web-based tool for the calculation of partial atomic charges

  RAČEK Tomáš SCHINDLER Ondřej TOUŠEK Dominik HORSKÝ Vladimír BERKA Karel KOČA Jaroslav SVOBODOVÁ Radka

  Article in Periodical

  Nucleic acids research, year: 2020, volume: 48, edition: W1, DOI

• BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management

  SEHNAL David BITTRICH Sebastian VELANKAR Sameer KOČA Jaroslav SVOBODOVÁ Radka BURLEY Stephen K. ROSE Alexander S.

  Article in Periodical

  PLoS Computational Biology, year: 2020, volume: 16, edition: 10, DOI

• High-performance macromolecular data delivery and visualization for the web

  SEHNAL David SVOBODOVÁ Radka BERKA Karel ROSE Alexander S. BURLEY Stephen K. VELANKAR Sameer KOČA Jaroslav

  Article in Periodical

  Acta Crystallographica Section D: Structural Biology, year: 2020, volume: 76, edition: December 2020, DOI

• Molecular Evolution and Diversification of Proteins Involved in miRNA Maturation Pathway

  MOTURU Tarakaramji SINHA Sansrity SALAVA Hymavathi THULA Sravankumar NODZYNSKI Tomasz SVOBODOVÁ Radka FRIML Jiří SIMON Sibu

  Article in Periodical

  Plants, year: 2020, volume: 9, edition: 3, DOI

• PDBe: improved findability of macromolecular structure data in the PDB

  ARMSTRONG David R. BERRISFORD John M. CONROY Matthew J. GUTMANAS Aleksandras ANYANGO Stephen CHOUDHARY Preeti CLARK Alice R. DANA Jose M. DESHPANDE Mandar DUNLOP Roisin GANE Paul GÁBOROVÁ Romana GUPTA Deepti HASLAM Pauline KOČA Jaroslav MAK Lora MIR Saqib MUKHOPADHYAY Abhik NADZIRIN Nurul NAIR Sreenath PAYSAN-LAFOSSE Typhaine PRAVDA Lukas SEHNAL David SALIH Osman SMART Oliver TOLCHARD James VARADI Mihaly SVOBODOVÁ Radka ZAKI Hossam KLEYWEGT Gerard J. VELANKAR Sameer

  Article in Periodical

  Nucleic acids research, year: 2020, volume: 48, edition: D1, DOI

• PDBe-KB: a community-driven resource for structural and functional annotations

  VARADI Mihaly BCRRISFORD John DESHPANDE Mandar NAIR Sreenath S. GUTMANAS Aleksandras ARMSTRONG David PRAVDA Lukáš AL-LAZIKANI Bissan ANYANGO Stephen BARTON Geoffrey J. BERKA Karel BLUNDELL Tom BORKAKOTI Neera DANA Jose DAS Sayoni DEY Sucharita DI MICCO Patrizio FRATERNALI Franca GIBSON Toby HELMER-CITTERICH Manuela HOKSZA David HUANG Liang-Chin JAIN Rishabh JUBB Harry KANNAS Christos KANNAN Natarajan KOČA Jaroslav KRIVAK Radoslav KUMAR Manjeet LEVY Emanuel D. MADEIRA F. MADHUSUDHAN M. S. MARTELL Henry J. MACGOWAN Stuart MCGREIG Jake E. MIR Saqib MUKHOPADHYAY Abhik PARCA Luca PAYSAN-LAFOSSE Typhaine RADUSKY Leandro RIBEIRO Antonio SERRANO Luis SILLITOE Ian SINGH Gulzar SKODA Petr SVOBODOVÁ Radka TYZACK Jonathan VALENCIA Alfonso FERNANDEZ Eloy Villasclaras VRANKEN Wim WASS Mark THORNTON Janet STERNBERG Michael ORENGO Christine VELANKAR Sameer

  Article in Periodical

  Nucleic acids research, year: 2020, volume: 48, edition: D1, DOI

• SQE charge calculation and its applicability for proteins

  SCHINDLER Ondřej RAČEK Tomáš SVOBODOVÁ Radka BERKA Karel KOČA Jaroslav

  Conference abstract

  Year: 2020, type: Conference abstract

• Validation of cycle conformation in Protein Data Bank

  BUČEKOVÁ Gabriela PAJTINKA Michal SVOBODOVÁ Radka

  Conference abstract

  Year: 2020, type: Conference abstract

• Visualization and Analysis of Protein Structures with LiteMol Suite

  SEHNAL David SVOBODOVÁ Radka BERKA K. PRAVDA Lukáš MIDLIK Adam KOČA Jaroslav

  Chapter of a book

  STRUCTURAL BIOINFORMATICS: METHODS AND PROTOCOLS, year: 2020, number of pages: 13 s.